Dai J, Kong X, Zhang D, Li W, Dong H. Technologies and theoretical basis of light and simplified cotton cultivation in China. Field Crops Res. 2017;214:142–8.
Article
Google Scholar
Wang K, Wang D, Zheng X, Qin A, Zhou J, Guo B, et al. Multi-strategic RNA-seq analysis reveals a high-resolution transcriptional landscape in cotton. Nat Commun. 2019;10:4714.
Article
Google Scholar
Ma Z, Zhang Y, Wu L, Zhang G, Sun Z, Li Z, et al. High-quality genome assembly and resequencing of modern cotton cultivars provide resources for crop improvement. Nat Genet. 2021;53:1385–91.
Article
CAS
Google Scholar
Huang G, Wu Z, Percy RG, Bai M, Li Y, Frelichowski JE, et al. Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution. Nat Genet. 2020;52:516–24.
Article
CAS
Google Scholar
Gao C. Genome engineering for crop improvement and future agriculture. Cell. 2021;184:1621–35.
Article
CAS
Google Scholar
Li J, Yu X, Zhang C, Li N, Zhao J. The application of CRISPR/Cas technologies to brassica crops: current progress and future perspectives. aBIOTECH. 2022;3:146–61.
Article
Google Scholar
Ryu KH, Huang L, Kang HM, Schiefelbein J. Single-cell RNA sequencing resolves molecular relationships among individual plant cells. Plant Physiol. 2019;179:1444–56.
Article
CAS
Google Scholar
Zhang TQ, Xu ZG, Shang GD, Wang JW. A Single-cell RNA sequencing profiles the developmental landscape of Arabidopsis root. Mol Plant. 2019;12:648–60.
Article
CAS
Google Scholar
Zhang TQ, Chen Y, Wang JW. A single-cell analysis of the Arabidopsis vegetative shoot apex. Dev Cell. 2021;56:1056-1074.e8.
Article
CAS
Google Scholar
Brady SM, Orlando DA, Lee JY, Wang JY, Koch J, Dinneny JR, et al. A high-resolution root spatiotemporal map reveals dominant expression patterns. Science. 2007;318:801–6.
Article
CAS
Google Scholar
Li S, Yamada M, Han X, Ohler U, Benfey PN. High-resolution expression map of the Arabidopsis root reveals alternative splicing and lincRNA regulation. Dev Cell. 2016;39:508–22.
Article
CAS
Google Scholar
Liu Q, Li P, Cheng S, Zhao Z, Liu Y, Wei Y, et al. Protoplast dissociation and transcriptome analysis provides insights to salt stress response in cotton. Int J Mol Sci. 2022. https://doi.org/10.3390/ijms23052845.
Article
Google Scholar
Tucker MR, Lou H, Aubert MK, Wilkinson LG, Little A, Houston K, et al. Exploring the role of cell wall-related genes and polysaccharides during plant development. Plants (Basel). 2018. https://doi.org/10.3390/plants7020042.
Article
Google Scholar
De Lorenzo G, Ferrari S, Giovannoni M, Mattei B, Cervone F. Cell wall traits that influence plant development, immunity, and bioconversion. Plant J. 2019;97:134–47.
Google Scholar
Keegstra K. Plant cell walls. Plant Physiol. 2010;154:483–6.
Article
CAS
Google Scholar
Denyer T, Timmermans MC. Crafting a blueprint for single-cell RNA sequencing. Trends Plant Sci. 2022;27:92–103.
Article
CAS
Google Scholar
Tan CK, Zhang J, Li ZY, Tarpley WG, Downey KM, So AG. Functional characterization of RNA-dependent DNA polymerase and RNase H activities of a recombinant HIV reverse transcriptase. Biochemistry. 1991;30:2651–5.
Article
CAS
Google Scholar
Li Y, Li W, Li J. The CRISPR/Cas9 revolution continues: from base editing to prime editing in plant science. J Genet Genomics. 2021;48:661–70.
Article
CAS
Google Scholar
Altpeter F, Springer NM, Bartley LE, Blechl AE, Brutnell TP, Citovsky V, et al. Advancing crop transformation in the era of genome editing. Plant Cell. 2016;28:1510–20.
CAS
Google Scholar
Atkins PA, Voytas DF. Overcoming bottlenecks in plant gene editing. Curr Opin Plant Biol. 2020;54:79–84.
Article
CAS
Google Scholar
Demirer GS, Zhang H, Matos JL, Goh NS, Cunningham FJ, Sung Y, et al. High aspect ratio nanomaterials enable delivery of functional genetic material without DNA integration in mature plants. Nat Nanotechnol. 2019;14:456–64.
Article
CAS
Google Scholar
Yoo SD, Cho YH, Sheen J. Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis. Nat Protoc. 2007;2:1565–72.
Article
CAS
Google Scholar
Li J, Meng X, Zong Y, Chen K, Zhang H, Liu J, et al. Gene replacements and insertions in rice by intron targeting using CRISPR-Cas9. Nat Plants. 2016;2:16139.
Article
CAS
Google Scholar
Wu FH, Shen SC, Lee LY, Lee SH, Chan MT, Lin CS. Tape-Arabidopsis Sandwich—a simpler Arabidopsis protoplast isolation method. Plant Methods. 2009;5:16.
Article
Google Scholar
Larkin PJ. Purification and viability determinations of plant protoplasts. Planta. 1976;128:213–6.
Article
CAS
Google Scholar
Xing HL, Dong L, Wang ZP, Zhang HY, Han CY, Liu B, et al. A CRISPR/Cas9 toolkit for multiplex genome editing in plants. BMC Plant Biol. 2014;14:327.
Article
Google Scholar
Gao W, Long L, Tian X, Xu F, Liu J, Singh PK, et al. Genome editing in cotton with the CRISPR/Cas9 system. Front Plant Sci. 2017;8:1364.
Article
Google Scholar
Jia M, Meng X, Song X, Zhang D, Kou L, Zhang J, et al. Chilling-induced phosphorylation of IPA1 by OsSAPK6 activates chilling tolerance responses in rice. Cell Discov. 2022;8:71.
Article
CAS
Google Scholar
Zhang B, Zhang L, Li F, Zhang D, Liu X, Wang H, et al. Control of secondary cell wall patterning involves xylan deacetylation by a GDSL esterase. Nat Plants. 2017;3:17017.
Article
CAS
Google Scholar
Saint-Jore-Dupas C, Nebenführ A, Boulaflous A, Follet-Gueye ML, Plasson C, Hawes C, et al. Plant N-glycan processing enzymes employ different targeting mechanisms for their spatial arrangement along the secretory pathway. Plant Cell. 2006;18:3182–200.
Article
CAS
Google Scholar
Du H, Kim S, Hur YS, Lee MS, Lee SH, Cheon CI. A cytosolic thioredoxin acts as a molecular chaperone for peroxisome matrix proteins as well as antioxidant in peroxisome. Mol Cells. 2015;38:187–94.
Article
Google Scholar
Zhang Y, Su J, Duan S, Ao Y, Dai J, Liu J, et al. A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes. Plant Methods. 2011;7:30.
Article
CAS
Google Scholar
Yang W, Ren J, Liu W, Liu D, Xie K, Zhang F, et al. An efficient transient gene expression system for protein subcellular localization assay and genome editing in citrus protoplasts. Hortic Plant J. 2022. https://doi.org/10.1016/j.hpj.2022.06.006.
Article
Google Scholar
Wang ZY, Wang Q, Chong K, Wang F, Wang L, Bai M, et al. The brassinosteroid signal transduction pathway. Cell Res. 2006;16:427–34.
Article
Google Scholar
He JX, Gendron JM, Yang Y, Li J, Wang ZY. The GSK3-like kinase BIN2 phosphorylates and destabilizes BZR1, a positive regulator of the brassinosteroid signaling pathway in Arabidopsis. Proc Natl Acad Sci USA. 2002;99:10185–90.
Article
CAS
Google Scholar
Zhang X, Ma W, Liu M, Li X, Li J, Lu Y, et al. OCTOPUS regulates BIN2 to control leaf curvature in Chinese cabbage. Proc Natl Acad Sci USA. 2022;119:e2208978119.
Article
CAS
Google Scholar
Shi Z, Chen X, Xue H, Jia T, Meng F, Liu Y, et al. GhBZR3 suppresses cotton fiber elongation by inhibiting very-long-chain fatty acid biosynthesis. Plant J. 2022;111:785–99.
Article
CAS
Google Scholar
Lin Q, Zong Y, Xue C, Wang S, Jin S, Zhu Z, et al. Prime genome editing in rice and wheat. Nat Biotechnol. 2020;38:582–5.
Article
CAS
Google Scholar
Gao X, Wheeler T, Li Z, Kenerley CM, He P, Shan L. Silencing GhNDR1 and GhMKK2 compromises cotton resistance to Verticillium wilt. Plant J. 2011;66:293–305.
Article
CAS
Google Scholar
Wang P, Pu Y, Abid MA, Kang L, Ye Y, Zhang M, et al. A rapid and efficient method for isolation and transformation of cotton callus protoplast. Int J Mol Sci. 2022. https://doi.org/10.3390/ijms23158368.
Article
Google Scholar
Farmer A, Thibivilliers S, Ryu KH, Schiefelbein J, Libault M. Single-nucleus RNA and ATAC sequencing reveals the impact of chromatin accessibility on gene expression in Arabidopsis roots at the single-cell level. Mol Plant. 2021;14:372–83.
Article
CAS
Google Scholar
Denyer T, Ma X, Klesen S, Scacchi E, Nieselt K, Timmermans MC. Spatiotemporal developmental trajectories in the Arabidopsis root revealed using high-throughput single-cell RNA sequencing. Dev Cell. 2019;48:840-52.e5.
Article
CAS
Google Scholar
Xu X, Crow M, Rice BR, Li F, Harris B, Liu L, et al. Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery. Dev Cell. 2021;56:557-68.e6.
Article
CAS
Google Scholar