- Open Access
Timber identification of Autranella, Baillonella and Tieghemella in the taxonomically challenging Sapotaceae family
Plant Methods volume 17, Article number: 64 (2021)
To enforce timber import laws and perform timber species identification, the identity of the botanical species must be well-defined. Since the Sapotaceae family is known as a taxonomically challenging family, we focus in this study on the four most valuable Sapotaceae timber species from tropical Africa: Autranella congolensis (De Wild.) A.Chev., Baillonella toxisperma Pierre, Tieghemella africana Pierre and Tieghemella heckelii (A.Chev.) Pierre ex Dubard. The wood anatomical characteristic fiber lumen fraction and Direct Analysis in Real Time—Time of Flight Mass Spectrometry (DART-TOFMS) were used to differentiate the four species and to make inferences on species delineation and taxonomic identity.
We observed differences in the fiber lumen fraction measurements and discerned two groups: (1) A. congolensis and B. toxisperma, and (2) T. africana and T. heckelii. In addition, all Mann–Whitney U comparisons and differences in distributions (Kolmogorov–Smirnov) for the fiber lumen fraction measurements were significant between all species. When permutating the data between species within those two groups, significant differences were still found between the species within those groups. This could indicate that the fiber lumen fraction is not diagnostic to discern the species. DART-TOFMS analysis showed that A. congolensis and B. toxisperma have distinct chemotypes, while T. heckelii and T. africana have remarkably similar chemotypes.
Based on our observations of similar chemotype and weakly differentiated fiber lumen ratio, we support an alternative taxonomic hypothesis that considers Tieghemella monotypic, because of the strong resemblance between T. heckelii and T. africana. Larger sample sizes and further research is required to develop methodology for the identification of these species. A taxonomic study utilizing molecular genetics would be beneficial to assess the status of the genus and the species limits. This could have implications towards their potential inclusion on CITES appendices if there is ever need for them to be listed. If Tieghemella africana and T. heckelii remain two distinct species, they should both be listed. Screening agents should be aware that the morphological and chemical differences between T. africana and T. heckelii are minimal.
Illegal logging and timber forensics
It is estimated that 30 to 90% of timber from the tropics is illegally sourced [1,2,3,4,5,6]. In addition to ecological damage, there are substantial economic and social problems associated with timber poaching . These issues have sparked an increased demand for timber identification and timber traceability techniques, with current frontrunners being wood anatomy, both traditional and with machine vision [7,8,9], Direct Analysis in Real Time Time-of-Flight Mass Spectrometry (DART-TOFMS) [10,11,12], genetic analysis  and stable isotope ratio analysis [6, 14].
Wood anatomy, DART-TOFMS and genetic analysis are currently the most employed methods to determine the species identity of timber. However, timber import laws and adjoining timber species identification can only be followed if the identity of the botanical species is well defined. Until three decades ago, taxonomists mainly used morphological traits to describe and delineate species. However, species can show high levels of intraspecific morphological variation, which complicates accurate species delineation and occasionally results in the erroneous splitting of species. Conversely, differentiation and speciation are not always accompanied by morphological change, as demonstrated by the abundance of cryptic species [15,16,17], where two or more distinct genetic lineages are classified under the same taxonomic unit because they are seemingly indistinguishable from a morphological point of view . For this reason, it is important to include molecular data when new species are described and named. Even when DNA-based methods are incorporated, genetic divergence can remain undetected resulting in wrongly delineated species. Reasons for this can include homoplasy (a shared character that did not arise from a common ancestor) and evolutionary processes such as hybridization (production of viable offspring by parents from different varieties or species), chloroplast capture (introgression of a chloroplast genome from one species into another), reticulate evolution (or network evolution, where a group of organisms originates through the partial merging of ancestor lineages) or incomplete lineage sorting (common ancestry of gene copies at a single locus extends deeper than previous speciation events) [16, 18,19,20].
The Sapotaceae family is known for its highly homoplasious morphological characters and the lack of unambiguous synapomorphies for subfamilies and tribes , leading to the dynamic nature of the Sapotaceae taxonomy and the many taxon synonyms . Here, we will focus on the four most important Sapotaceae timber species from tropical Africa: Autranella congolensis (De Wild.) A.Chev., Baillonella toxisperma Pierre, Tieghemella africana Pierre and Tieghemella heckelii (A.Chev.) Pierre ex Dubard . All four species represent the largest trees in their respective forested regions, reaching heights of 50 m or more and diameters of sometimes more than 2 m.
Tieghemella africana is well-known to the international timber trade as Douka . This trade name can occasionally cover timber from B. toxisperma and is often considered as the same trade category as wood from T. heckelii. However, T. heckelii is traded under the generic trade name (or pilot name) Makoré, which can include timber from T. africana and B. toxisperma. Tieghemella africana is typically found in the evergreen rainforests from Cameroon to Cabinda (Angola) in the west, and eastward to the Republic of the Congo and Democratic Republic of the Congo (DRC) . The highest species densities are reported in Equatorial Guinea, western Gabon and in the Republic of the Congo, north of Kouilou. In other regions it can be mixed with T. heckelii and B. toxisperma. Heartwood of T. africana is very similar to T. heckelii but tends to be more intensely stained with a more distinct vein pattern (for an image of the heartwood of all species, please see Additional file 1: Figure S1). In provenances from the Republic of the Congo, the wood has been noted to darken to a red violet colour. In addition, T. africana tends to be slightly harder and heavier than T. heckelii. The main distribution area for T. heckelii covers eastern Liberia, Côte d’Ivoire and Ghana, but the species also occurs in lower densities in Nigeria . As such, the range of T. heckelii overlaps with other morphologically similar Sapotaceae species, creating a challenge for field identification. Baillonella toxisperma and A. congolensis occur in low densities in the rainforest of southern Nigeria, Cameroon, Equatorial Guinea, Gabon, Cabinda (Angola), Republic of the Congo and the Democratic Republic of the Congo (DRC) [27, 28]. Baillonella toxisperma (Moabi), can look very similar to T. heckelii, but the distinction is clearer than for T. africana from Ghana or the Ivory Coast. Baillonella toxisperma is also found mixed with shipments of T. africana and T. heckelii. Autranella congolensis is reported to be falsely sold as B. toxisperma, but Autranella congolensis wood is harder and darker with a violet colour. Standing trees of B. toxisperma and A. congolensis are quite similar to each other, with one primary difference being B. toxisperma exhibits a distinctively flatter crown .
Although the four Sapotaceae species in this study are currently assigned to three distinct genera, all four species were previously included in the genus Mimusops . Autranella congolensis seems to be related to the latter, but it differs in having stipules, a longer corolla tube and larger fruits  and was thus reinstated as a distinct (monotypic) genus. The genus Baillonella was first described by Pierre based on a seed collected in Gabon . Engler then included the genus as a section in Mimusops, but the group was later reinstated as a separate genus because of the thin seed coat and particular leaf veins that distinguish it from the Mimusops . While multiple Baillonella species were described in the 1900s, B. toxisperma is currently the only recognized species. The genus Tieghemella was first described by Pierre , but was later subsequently added to the genera Dumoria, Mimusops and Baillonella, after which Tieghemella was reinstated as a distinct genus. Currently, T. africana and T. heckelii are the only two species recognized in the genus. However, a taxonomic study is needed to assess the status of the genus and the species limits, since they may be conspecific [25, 26] as suggested by the chemical analysis as well (see further).
As indicated, these Sapotaceae species all have similar dense and reddish-brown wood. Because of this similarity, the wood is used for similar purposes and often traded together under the same commercial name. As such it is important (1) to be able to identify these species within the timber trade and (2) to be certain that these are four different species. In this study, we will:
Assess the robustness of the one wood anatomical characteristic that is claimed to allow for the differentiation of these four Sapotaceae species: the fiber lumen fraction (referred to as the coefficient de souplesse by [31, 32]).
Assess the efficacy of using chemical fingerprints via DART-TOFMS for species differentiation.
Draw inferences from the conclusions of (1) and (2) towards the species delineation and the taxonomic identity of these four Sapotaceae species.
Materials and methods
A total of 65 wood specimens were used, 62 collected from the Tervuren Wood Collection (Royal Museum for Central Africa, Tervuren, Belgium) and three from the World Forest ID project  (see Additional file 2: Table S1). Some of these wood specimens were used for wood anatomical analysis (n = 17) and all except one were used to obtain chemical fingerprints via DART-TOFMS (n = 64). Two samples from the Tervuren Wood Collection have a corresponding herbarium voucher at Meise Botanic Garden (BR) in Belgium (Additional file 2: Table S1).
Wood anatomical analysis
The anatomical differences between species determined via the IAWA list of microscopic features  on InsideWood  were compared to the anatomical slices obtained in this study. Anatomical cross-sections (transverse) of 16 wood specimens (Table 1 and Additional file 2: Table S1) were digitized at 20× magnification using Stream Image Analysis Software (StreamMotion, Olympus, Tokyo, Japan) with a scanning stage (Märzhäuser Wetzlar, Wetzlar, Germany) and a UC30 camera (Olympus, Tokyo, Japan) mounted on a light microscope (BX60, Olympus, Tokyo, Japan). For each image, fibers were used to determine the fiber lumen fraction:
Images were aligned in transverse direction and the fiber lumen fraction was determined in two perpendicular directions on the fiber (4 measurements per fiber = 2 fiber lumen fractions, Fig. 1). The average of those two measurements was taken as the fiber lumen fraction of that fiber.
Notched boxplots were created using the ggplot2 package  in RStudio (Rstudio Team, 2016). Boxplots show the total distribution of measurements and notched boxplots offer a quick visual check whether a statistical difference in median can be expected. Normality of the data was checked using the Shapiro–Wilk test  and the non-parametric independent 2-group Mann–Whitney U test was used to determine whether the fiber lumen fractions come from the same population . In addition, the Kolmogorov–Smirnov test was used as an extra check to determine whether the distribution of fiber lumen fractions were distinct for each species. Where the Mann–Whitney U test works with the rank of values, the Kolmogorov–Smirnov test compares the cumulative distribution of the datasets. Finally, 35 permutations were run in combination with the non-parametric independent 2-group Mann–Whitney U test to determine whether the comparisons indicate real differences in fiber lumen fraction between the two species groups (A. congolensis/B. toxisperma and T. africana/T. heckelii). For the group A. congolensis/B. toxisperma, four Tw samples belonging to these two species were randomly picked and placed under A. congolensis, the same was done for B. toxisperma. This was repeated for each of the 35 permutations. Per permutation run, one sample was not used, as there are nine samples between those species (see Table 1). This was to keep the dataset balanced. The same was done for the species group T. africana/T. heckelii with four samples randomly picked each permutation run per species.
A training set was created consisting of heartwood slivers taken from A. congolensis individuals (n = 21), B. toxisperma (n = 21), T. africana (n = 4), and T. heckelii (n = 6) (Additional file 2: Table S1). Due to limitations regarding availability of verified specimens, two spectra were collected from each Tieghemella sample. Spectra were collected with a TOF Mass Spectrometer (AccuTOF, JEOL, USA, INC., Peabody, MA. USA) equipped with a DART ion source (DART-SVP, IonSense Inc., Saugus, MA. USA). Each spectrum was acquired in the range of 50 m/z to 1000 m/z by holding the sample with forceps in a protonated helium gas stream heated to 350 °C for approximately 7 s. Spectra were calibrated using poly(ethylene glycol) 600 (Ultra Scientific, Kingstown, RI, USA), then averaged and background subtracted with msAxel (version 126.96.36.199, JEOL Ltd.). Mass spectra were centroided and exported as text files for analysis using Mass Mountaineer software (RBC Software, Peabody, MA, USA). Detailed instrument parameters can be found in .
Using Mass Mountaineer, samples were initially grouped into four separate classes: A. congolensis, B. toxisperma, T. africana, and T. heckelii. Ions were selected with a 5% threshold and a mass tolerance of 5 mmu. The total number of ions selected for Principal Component Analysis (PCA) was n = 907. For the Discriminant Analysis of Principal Components (DAPC) model, the total number of ions was reduced by applying Analysis of Variance (ANOVA), wherein each statistically significant m/z value for discrimination between class means (p ≤ 0.05) was retained for a total of 495 ions (Mass Mountaineer Guide, Version 188.8.131.52). The PCA with the four species as separate classes was constructed using 28 PCs encompassing 90% of variance (Additional file 3: Figure S2). Since the Tieghemella species showed a grouping trend in the PCA (Fig. 4), it was decided to group both species into a single class in the subsequent classification analysis. Between class variation was calculated by applying DAPC and the performance of the model was calculated using Leave-One-Out-Cross-Validation (LOOCV) [11, 39, 40]. An additional set of spectra not included in the training set was used as a test set for the model. These consisted of A. congolensis (n = 2), B. toxisperma (n = 3), T. africana (n = 1), and T. heckelii (n = 2). No spectra from the training set, including replicates, were used for testing the model. An additional DAPC model was generated to evaluate the Tieghemella species alone.
Wood anatomical analysis
Autranella congolensis had the lowest mean fiber lumen fraction compared to the other species (Table 1), but the range of values showed some overlap with B. toxisperma due to the high standard deviation. The two Tieghemella species had a noticeably higher mean fiber lumen fraction, with T. heckelii having the highest value. The notched boxplots showed two groups based on the distribution of the fiber lumen fraction measurements: A. congolensis/B. toxisperma and T. africana/T. heckelii. (Fig. 2). Furthermore, the Mann–Whitney U test rejected the null hypothesis that the fiber lumen fractions for the species came from the same population and the KS test showed a high significance (p < 0.001), indicating the difference in distribution. However, when we conducted independent 2 group Mann–Whitney U tests, differences were significant for a proportion of permutations (74% significant comparing A. congolensis and B. toxisperma; 80% comparing T. africana and T. heckelii). This indicates overlap in fiber lumen fraction between individuals of different species.
The heatmap of the mass spectra shows that the ion pattern from 90–215 m/z was present in all four species (Fig. 3). Higher relative abundance at 409.163 m/z was noted for A. congolensis. Higher relative abundance of ions at 434.316, 440.326 and 452.310 m/z appeared to be indicative of the Tieghemella species. Baillonella toxisperma showed an ion at approximately 84.081 m/z, which was not found or was observed at lower relative abundance in the other species, and also showed a higher relative abundance of the ion at 130.087 m/z.
The PCA scatterplot (Fig. 4) showed distinctive grouping for A. congolensis and B. toxisperma, while T. africana and T. heckelii group together. There appeared to be three outlier spectra, one from A. congolensis and two from B. toxisperma. The outlier of A. congolensis (Tw4300), and one from B. toxisperma (Tw2101), did not group with any other species class, while the other outlier from the B. toxisperma class (Tw1675) grouped with A. congolensis. These outliers may have been due to misidentifications at the field collection stage or human error. Regardless, they were removed from the PCA model and subsequent analysis, bringing the total number of ions to n = 792.
The DAPC model without the outliers and with T. africana and T. heckelii spectra in a single class, Tieghemella spp., showed distinctive grouping between the three classes (Fig. 5). The calculated LOOCV value for the DAPC model was 96.61%, indicating that two spectra (B. toxisperma Tw1666 and T. heckelii Tw22612) were misclassified. All test samples (n = 8) were correctly assigned (Table 2).
Analysis of the Tieghemella species indicated that the species’ chemotypes are remarkably similar (Fig. 6). Some variation in ion intensity can be seen between the species. However, this variation also changes from sample to sample (Fig. 3) but the overall ion pattern (Fig. 6) remains consistent.
An additional PCA scatterplot (Additional file 4: Figure S) and DAPC model (Figure not shown) were created using replicates from all T. heckelii (n = 16) and T. africana (n = 10) samples. All observed ions (n = 352) were used and based on the PCA plot, the species did not show separating trends. The ions underwent ANOVA, leaving a total of 29 ions for DAPC analysis. The LOOCV value of the DAPC model was 84.62%; all T. heckelii samples were correctly assigned to their class, while only 6 of the 10 T. africana samples were correctly assigned.
Wood anatomical analysis
The wood of A. congolensis, B. toxisperma, T. africana and T. heckelii is used for similar purposes and often traded together under the same commercial name. In addition, the taxonomic history of the Sapotaceae has not been unequivocal. As such it is required for law enforcement (1) to be able to identify these species within the timber trade and (2) to be certain that these are four different species. When comparing the four species in terms of the IAWA list of microscopic features  on InsideWood , we saw only minimal differences. The two Tieghemella species have vessel-ray pits with distinct borders compared to A. congolensis and B. toxisperma. The latter two species have vessel-ray pits of two distinct sizes. The Tieghemella species both have gums and other deposits in their heartwood cells. The fibers of A. congolensis are very thick-walled, whereas they can be thin or thick for the other species. Autranella congolensis also has prismatic crystals present, which can be in chambered axial parenchyma cells. Finally, A. congolensis and B. toxisperma have a higher wood density compared to the Tieghemella spp. When comparing this description with the anatomical slices used in this study, we noticed some important differences. The specimens of A. congolensis and B. toxisperma also have vessel-ray pits with distinct borders. Moreover, it is not clear whether these species have vessel-ray pits of two distinct sizes. As such, this characteristic could easily be misinterpreted. All four species appear to have deposits of different proportions in their heartwood cells (mainly in ray and parenchyma cells). Our samples confirm the thick-walled fibers for A. congolensis, however this also appears to be the case for B. toxisperma. In our samples, the Tieghemella species have thin-to-thick walled fibers. Only Tw633 (Autranella congolensis) appeared to have prismatic crystals clearly present. As indicated by Normand (1998) , the fiber lumen fraction measurements might then be the only discerning characteristic for these species.
For the fiber lumen fraction measurements, all Mann–Whitney U comparisons and differences in distributions (Kolmogorov–Smirnov) were highly significant (p < 0.001) between all species. Based on visual assessment of the boxplots for the fiber lumen fraction measurements, A. congolensis and B. toxisperma tend to have a lower fiber lumen fraction than T. africana and T. heckelii. We consider this may be a valuable diagnostic characteristic for differentiating A. congolensis and B. toxisperma from the two Tieghemella species. However, when permutating the data per sample, for A. congolensis and B. toxisperma, 74% of the permutations were significant based on the independent 2-group Mann–Whitney U test. For T. africana and T. heckelii this was 80% of the permutations. This implies that even when the samples are randomly distributed across species (within either A. congolensis/B. toxisperma or T. heckelii/T. africana), significant differences in fiber lumen fraction are still possible. The differences in fiber lumen fraction are nuanced, implying that fiber lumen fraction is not a consistent diagnostic characteristic for the differentiation of these four species, especially when insufficient material is present to study a representative fragment of the specimen.
The PCA plot containing all ions from the four species (Fig. 4) showed that A. congolensis and B. toxisperma formed distinct clusters, while T. africana and T. heckelii grouped together in a third cluster. The DAPC model with the Tieghemella spp. making up a single class (Fig. 5) resulted in a LOOCV value of 96.61% and all test samples (n = 8) were correctly assigned, indicating that the three groups have chemotypes that were distinct enough to allow separation. Analysis of T. heckelii and T. africana showed that these two species have remarkably similar chemotypes. This could be (1) due to misidentifications that occurred during field collection, (2) because the two species are closely related, or (3) because the two species are conspecific. The first hypothesis can only be true for Tieghemella samples collected in Côte d’Ivoire, since this is the only country where the occurrence of both species has been reported . However, the reports of T. africana in Côte d’Ivoire are possible erroneous because they would indicate that the species’ distribution is discontinuous, since the main distribution is in Central Africa. We suspect that the T. africana individuals reported in Côte d’Ivoire are misidentified T. heckelii individuals, since both species look very similar morphologically. Our dataset included two T. heckelii samples (Tw22612 and Tw26511) collected in Côte d’Ivoire which were grouped in the PCA and correctly classified in the DAPC model with a LOOCV of 84.62% (Figure not shown). However, the LOOCV is likely increased due to the presence of replicate spectra and because of the limited sample size we could not draw definitive conclusions.
While there were many similar ions between all species analyzed in this study, the ions found in both T. heckelii and T. africana at 434.316, 440.326 and 452.310 m/z were either missing in A. congolensis and B. toxisperma spectra or relatively low in intensity, allowing for the Tieghemella species to be differentiable from A. congolensis and B. toxisperma with a DAPC model accuracy of 96.61%. While the PCA provides some support for the hypothesis that T. africana and T. heckelii are more closely related than previously considered, no definitive conclusion can be drawn without a larger number of samples from the respective species. Furthermore, previous research has shown that separating species within a single family yielded a model accuracy of 82.2% ; this lower accuracy for closely related Meliacaeae species (due to similarity in chemotype) in conjunction with those reported for the Tieghemella spp. could indicate that the two Tieghemella species are, in fact, separate species but the genes that produced their chemotypes may be under selection. Future research should focus on obtaining both vouchered and field collected samples of the two species of Tieghemella. We hope that other researchers can add to these datasets, in the spirit of a contribution to shared knowledge, so that we can revisit the current conclusions. As was previously indicated, a taxonomic study utilizing molecular genetics would be beneficial to assess the status of the Tieghemella genus and its species limits [25, 26], as our results suggest the two species could be conspecific. This would have important implications towards the timber trade, and timber species identification.
In this study we assessed the wood anatomical characteristic fiber lumen fraction and DART-TOFMS analysis for species differentiation of Autranella congolensis, Baillonella toxisperma, Tieghemella africana and Tieghemella heckelii. Based on visual assessment of the boxplots for the fiber lumen fraction measurements, two groups could be discerned: (1) A. congolensis and B. toxisperma and (2) T. africana and T. heckelii. In addition, all Mann–Whitney U comparisons and differences in distributions (Kolmogorov–Smirnov) for the fiber lumen fraction measurements were significant. When permutating our data within those two groups, significant differences based on the Mann–Whitney U test were found in 74% or 80% of the cases, respectively. This indicates that the fiber lumen fraction is not a consistent diagnostic characteristic for the identification of these four species. The chemotypes detected via DART-TOFMS of A. congolensis and B. toxisperma were distinct from each other and from those of Tieghemella spp., demonstrating that they can be identified by their chemotypes. Conversely, Tieghemella heckelii and T. africana have remarkably similar chemotypes that hinder species identification, and further taxonomic research is needed to assess whether they could be conspecific. Our study shows that chemical profiling can be used to reliably distinguish A. congolensis, B. toxisperma and Tieghemella spp. However, without additional vouchered specimens of the Tieghemella spp., we are limited in our ability to distinguish Tieghemella africana from Tieghemella heckelii. In conclusion, distinguishing the timber of the Tieghemella species is difficult, as the fiber lumen measurements are too similar and the specimens required for chemical analysis were scarce. The ability to definitively separate closely related members from taxonomically challenging groups, such as Sapotaceae, is often required by law enforcement agencies. As such, future research will concentrate on obtaining vouchered Tieghemella africana and Tieghemella heckelii samples in an effort to verify if a method can be established to separate these species.
Availability of data and materials
The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.
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The authors would like to thank the Royal Museum for Central Africa (Tervuren, Belgium) and World Forest ID (https://worldforestid.org/) for the management and planning of the sample collection. The findings and conclusions in the article are those of the authors and do not necessarily represent the views of the U.S. Fish and Wildlife Service or of the U.S. Forest Service.
This research was conducted under the HERBAXYLAREDD project, funded by the Belgian Belspo-BRAIN program axis 4 (code: BR/143/A3/HERBAXYLAREDD). BELSPO provided the main funding and support for this study. SVA was supported individually by a Postdoctoral Fellowship of the Belgian American Educational Foundation (www.baef.be).
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Macroscopic scan of the heartwood for A. congolensis, B. toxisperma, T. africana and T. heckelii.
Sample information showing the species, object ID (Tw = Tervuren Wood Collection, Belgium and World Forest ID collection at Kew = Royal Botanic Gardens Kew, United Kingdom), Country of Origin (UNK = unknown) and whether the sample was used for the wood anatomical analysis or DART TOFMS analysis. The green samples also have a corresponding herbarium voucher at Meise Botanic Garden (BR) in Belgium.
Plot showing the number of PC’s and Cumulative Variance (%) for the PCA.
PCA scatterplot for T. heckelii and T. africana using replicates from all T. heckelii (n = 16) and T. africana (n = 10) samples.
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Deklerck, V., Price, E., Vanden Abeele, S. et al. Timber identification of Autranella, Baillonella and Tieghemella in the taxonomically challenging Sapotaceae family. Plant Methods 17, 64 (2021). https://doi.org/10.1186/s13007-021-00766-x
- Wood anatomy
- Timber identification
- Taxonomic identity