Table 1 Properties of custom-made CDF files for AGRONOMICS1 arrays
CDF file | Genome version | # of probes (ath1) + control probes) | # of probe sets (ath + control probe sets) | # of genes probed(M + P)2) | Description |
|---|---|---|---|---|---|
agronomics1_ TAIR9_gene | TAIR9(2009) | 1,246,484 (1,093,816 + 152,668) | 30,608 (30,237 + 371) | 29,920(33 + 67) | Gene-specific probe sets of all suitable probes from the antisense strand |
agronomics1_ TAIR10_gene | TAIR10(2010) | 1,626,780 (1,474,112 + 152,668) | 31,027 (30,656 + 371) | 30,466(35 + 85) | Gene-specific probe sets of all suitable probes from the antisense strand |
agronomics1_TAIR10_gene_sense | TAIR10(2010) | 1,397,929 (1,245,261 + 152,668) | 30,757 (30,386 + 371) | 30,174(36 + 84) | Gene-specific probe sets of all suitable probes from the sense strand |