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Table 3 AUPR and AUROC values of DeepAraPPI and ESMAraPPI on the C2 and C3 test setsa

From: Pre-trained protein language model sheds new light on the prediction of Arabidopsis protein–protein interactions

Method

AUPR

AUROC

C2

C3

C2

C3

DeepAraPPI_RCNN

0.541

0.331

0.852

0.778

DeepAraPPI_Domain2vec

0.706

0.639

0.884

0.845

DeepAraPPI_Go2vec

0.771

0.709

0.942

0.917

DeepAraPPI

0.871

0.785

0.978

0.944

ESMAraPPI

0.824

0.810

0.966

0.960

  1. a Figure in bold font indicates the corresponding model achieved the maximal AUPR and AUROC value
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Plant Methods

ISSN: 1746-4811