Table 2 Comparison of ESMAraPPI and AraPPINet on the C2 and C3 test sets

From: Pre-trained protein language model sheds new light on the prediction of Arabidopsis protein–protein interactions

Methods	C2					C3
Methods	Accuracy	Specificity	MCC	Recall	Precision	Accuracy	Specificity	MCC	Recall	Precision
ESMAraPPI	0.957	0.994	0.708	0.589	0.901	0.954	0.994	0.688	0.557	0.902
AraPPINet	0.939	0.999	0.551	0.337	0.966	0.937	0.999	0.534	0.318	0.966

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ISSN: 1746-4811

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