Fig. 5
From: TreeJ: an ImageJ plugin for interactive cell lineage reconstruction from static images
Grouping and annotations of cells in an Arabidopsis thaliana root. A, B 3D visualizations with the ImageJ 3D viewer [11] of the segmentation obtained with the Morphological Segmentation ImageJ plugin [16], top and side views, respectively. C TreeJ interface after tree reconstruction and tagging. D Reconstructed trees for each position (\(P_{x}\) with x from 1 to 5) and each layer. Tags assigned to the grouped cells contain the layer name and the position number. E 3D visualizations with the ImageJ 3D viewer of the images obtained using tag-based selection of the three layers at Position 1 (top view)