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Table 3 Read lengths of R9.4.1 datasets

From: Species-specific basecallers improve actual accuracy of nanopore sequencing in plants

Basecaller model

P. stellatum (R9.4.1)

X. johnsonii

Average (Kbp)

N50 (Kbp)

Average (Kbp)

N50 (Kbp)

Guppy 5 super accurate

28.98 ± 24.87

45.89

25.49 ± 21.91

39.57

Guppy 6 super accurate

28.99 ± 24.87

45.89

25.49 ± 21.91

39.57

Guppy 6 super accurate—plant

26.15 ± 24.47

45.39

23.48 ± 21.81

39.52

Reciprocal species-specific

26.02 ± 22.80

41.40

24.71 ± 21.10

38.19

Species-specific

26.76 ± 23.07

42.28

24.81 ± 21.26

38.42

  1. Average and N50 read lengths for each dataset. Averages are shown with standard deviations. Reciprocal species-specific are datasets where Phebalium stellatums reads were basecalled with the X. johnsonii model and Xanthorrhoea johnsoniis reads were basecalled with the P. stellatum model
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Plant Methods

ISSN: 1746-4811