Table 2 Alignment of each cultivar to the three Japanese plum MYB10 reference regions
Sample | MYB10 region | ||||||||
|---|---|---|---|---|---|---|---|---|---|
‘Sanyueli’ (135 kb) | Zhongli-1 (271 kb) | Zhongli-2 (90 kb) | |||||||
On-target reads (%) | Cov. bases (%) | Mean depth | On-target reads (%) | Cov. bases (%) | Mean depth | On-target reads (%) | Cov. bases (%) | Mean depth | |
‘Angeleno’ | 1,036 (5.63%) | 73.3 kb (54.49%) | 12.2x | 489 (4.17%) | 96.7 kb (35.7%) | 3.8x | 486 (4.15%) | 48.7 kb (54.34%) | 9.1x |
‘Black Gold’ | 1,300 (5.37%) | 76.8 kb (57.07%) | 19.1x | 572 (2.58%) | 123.0 kb (45.42%) | 5.5x | 611 (2.75%) | 77.7 kb (86.31%) | 14.1x |
‘Fortune’ | 1,692 (10.47%) | 78.1 kb (58.05%) | 23.2x | 841 (8.60%) | 165.1 kb (60.97%) | 9.1x | 616 (6.30%) | 72.7 kb (81.18%) | 18.5x |
‘Golden Japan’ | 168 (0.99%) | 71.1 kb (52.85%) | 2.0x | 67 (0.63%) | 133.8 kb (49.42%) | 1.2x | 45 (0.43%) | 31.6 kb (35.31%) | 1.0x |
‘TC Sun’ | 1,824 (7.04%) | 84.5 kb (62.75%) | 29.1x | 677 (6.23%) | 214.8 kb (79.33%) | 19.3x | 280 (2.58%) | 53.6 kb (59.84%) | 11.1x |