|
Locationa
|
Co-isolating proteinsb
|
“1 unique peptide” proteinsc
|
“Sporadically identified” proteinsd
|
|---|
|
# proteins
|
%
|
% total proteins identified
|
# proteins
|
%
|
% total proteins identified
|
# proteins
|
%
|
% total proteins identified
|
|---|
|
Cytosol
|
92
|
36.22
|
4.21
|
59
|
34.10
|
2.70
|
52
|
36.11
|
2.38
|
|
Endomembrane
|
45
|
17.72
|
2.06
|
25
|
14.45
|
1.14
|
27
|
18.75
|
1.24
|
|
Mitochondrion
|
52
|
20.47
|
2.38
|
25
|
14.45
|
1.14
|
21
|
14.58
|
0.96
|
|
Nucleus
|
37
|
14.57
|
1.69
|
32
|
18.50
|
1.46
|
30
|
20.83
|
1.37
|
|
Peroxisome
|
19
|
7.48
|
0.87
|
5
|
2.89
|
0.23
|
4
|
2.78
|
0.18
|
|
Plasma membrane
|
4
|
1.57
|
0.18
|
9
|
5.20
|
0.41
|
1
|
0.69
|
0.05
|
|
Unknown/Multiple
|
5
|
1.97
|
0.23
|
17
|
9.83
|
0.78
|
9
|
6.25
|
0.41
|
|
Total
|
254
|
100.00
|
11.62
|
172
|
99.42
|
7.87
|
144
|
100.00
|
6.59
|
- aBased on predictions for the localization of the the tomato proteins by TargetP, ChloroP, Predotar, WoLF PSORT, and YLoc and the known localization (PPDB, plprot, SUBA4) and functions of Arabidopsis homologs proteins (TAIR); the locations of some proteins had multiple subcellular locations or their location could not be inferred
- bThe identity and putative locations of the proteins that reproducibly co-isolated (CIPs) with the tomato chloroplast stroma are found in Additional file 5: Table S5
- cThe identity and putative locations of the proteins identified by a single unique peptide are found in Additional file 3: Table S3
- dThe identity and putative locations of the proteins that were sporadically identified in the chloroplast stroma are found in Additional file 4: Table S4
