Table 4 Comparative performance of PGA and GeSeq in annotating plastomes
From: PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes
| Â | Gymnosperms | Angiosperms | |||||
|---|---|---|---|---|---|---|---|
GenBank | GeSeq | PGA | GenBank | GeSeq | PGA | ||
tRNAs lacking introns | MG | 2.20 | 0.75 | 0.10 | 0.10 | 0.15 | 0.00 |
WG | 0.15 | 0.10 | 0.00 | 0.50 | 0.00 | 0.00 | |
WGB | 2.85 | 2.2 | 0.00 | 4.65 | 1.70 | 0.00 | |
CG | 21.60 | 23.70 | 26.60 | 24.00 | 27.40 | 29.25 | |
tRNAs with introns | ME | 1.65 | 2.60 | 0.00 | 0.30 | 1.75 | 0.20 |
WE | 0.10 | 0.00 | 0.00 | 0.50 | 0.00 | 0.00 | |
WEB | 2.20 | 2.55 | 0.00 | 3.30 | 1.80 | 0.00 | |
CE | 8.35 | 7.15 | 12.30 | 12.00 | 12.50 | 15.85 | |
PCGs lacking introns | MG | 1.15 | 0.65 | 0.05 | 0.15 | 0.00 | 0.10 |
WG | 0.10 | 0.05 | 0.05 | 0.00 | 0.05 | 0.10 | |
WGB | 0.40 | 35.65 | 0.55 | 0.45 | 23.00 | 0.10 | |
CG | 69.95 | 35.25 | 70.90 | 69.75 | 47.35 | 70.15 | |
PCGs with introns | ME | 1.55 | 4.35 | 0.00 | 0.70 | 4.05 | 0.50 |
WE | 0.00 | 0.00 | 0.00 | 0.05 | 0.00 | 0.10 | |
WEB | 7.90 | 14.70 | 0.15 | 11.60 | 16.55 | 0.05 | |
CE | 14.35 | 4.75 | 23.65 | 20.40 | 12.05 | 32.15 | |
rRNAs | MG | 0.60 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
WG | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | |
WGB | 2.25 | 2.55 | 0.05 | 2.60 | 0.90 | 0.00 | |
CG | 1.90 | 2.20 | 4.70 | 5.40 | 7.10 | 8.00 | |