App name | App type | Type of visualisation | Network type import | Import of exp. datasets | Built-in clustering | Built-in filtering | Export formats | Technical operability |
---|---|---|---|---|---|---|---|---|
DiNAR | Stand-alone web app | Interactive: dynamic & Static | Preprocessed cytoscape, TSV text, ... (subApps) | YES | YES (DiNAR subApps clustering) | Stat. significance, node weight, min.node degree, cluster/gene ID | Interactive: dynamic & static; log, TSV, GraphML | YES |
AIM [3] | Online | Static database | NAp | NO | NAp | ND | ND | NO |
CyLineUp [4] | Cytoscape 3 plugin | Noninteractive static | Cytoscape | YES | NO | Stat. significance (p value) | Noninteractive static | YES |
DyNet [5] | Cytoscape 3 plugin | Semi-interactive static | Condition specific | NO | YES (heatmap) | ND | Noninteractive static | YES |
DyNetviewer [6] | Cytoscape 3 plugin | Coarse dynamic | text | YES | YES | Gene expression, SD | Text | YES |
Diffany [7] | Cytoscape 3 plugin | Noninteractive static | Cytoscape | NO | NO | Edge weight | Noninteractive static | YES |
PCSF [8] | R package | Interactive static | Edge list | YES | YES | Functional enrichment | Igraph | YES |
iNID [9] | Online | Static | NAp | YES | YES | p values logFC | ND | NO |