Comparative performance of the BGISEQ-500 and Illumina HiSeq4000 sequencing platforms for transcriptome analysis in plants

Table 3 Summary of INDEL identification

	Sample name	Total number	Up2k	Exon	Intron	Down2k	Intergenic
HI-SEQ4000 PE100	1_DMSO_6h_1	813	45	611	108	30	19
	2_DMSO_6h_2	774	53	590	79	30	22
	3_DMSO_6h_3	736	41	561	94	25	15
	4_ABA_6h_1	893	48	675	128	28	14
	5_ABA_6h_2	776	43	589	105	24	15
	6_ABA_6h_3	820	40	618	123	31	8
	Average	802	45	607	106	28	16
BGI-SEQ500 PE100	1_DMSO_6h_1	2438	65	1905	403	46	19
	2_DMSO_6h_2	2342	72	1879	329	41	21
	3_DMSO_6h_3	2395	71	1832	416	52	24
	4_ABA_6h_1	2382	61	1898	359	40	24
	5_ABA_6h_2	2128	61	1731	287	33	16
	6_ABA_6h_3	1999	61	1617	278	31	12
	Average	2281	65	1810	345	41	19
BGI-SEQ500 PE75	1_DMSO_6h_1	1834	65	1552	163	43	11
	2_DMSO_6h_2	1459	59	1258	84	38	20
	3_DMSO_6h_3	2130	87	1789	175	54	25
	4_ABA_6h_1	1561	55	1318	131	42	15
	5_ABA_6h_2	1288	46	1125	68	33	16
	6_ABA_6h_3	1252	51	1094	67	28	12
	Average	1587	61	1356	115	40	17

ISSN: 1746-4811