Table 2 Assembly statistics of plastid genome for all specimens used in this study
From: Genome skimming herbarium specimens for DNA barcoding and phylogenomics
Sample ID | PCR cycles | Species | Family | Total sequences | Raw data (gb) | #contigs | Total assembly length (bp) | Completed | GenBank accession number |
|---|---|---|---|---|---|---|---|---|---|
01D | ×8 | Manglietia fordiana | Magnoliaceae | 22404632 | 3.36 | 9 | 158993 | 1059 bp gap | MH394393 |
01E | ×10 | Manglietia fordiana | Magnoliaceae | 25869654 | 3.88 | 32 | 159759 | 349 bp gap | MH394394 |
01A | ×12 | Manglietia fordiana | Magnoliaceae | 35201972 | 5.28 | 14 | 158241 | 1840 bp gap | MH394391 |
01B | ×14 | Manglietia fordiana | Magnoliaceae | 30007234 | 4.5 | 14 | 158221 | 1840 bp gap | MH394392 |
02D | ×8 | Manglietia fordiana | Magnoliaceae | 22829038 | 3.42 | 8 | 161497 | 1040 bp gap | MH394397 |
02E | ×10 | Manglietia fordiana | Magnoliaceae | 32497068 | 4.87 | 21 | 160113 | Y | MH394398 |
02A | ×12 | Manglietia fordiana | Magnoliaceae | 29637182 | 4.45 | 12 | 158315 | 1802 bp gap | MH394395 |
02B | ×14 | Manglietia fordiana | Magnoliaceae | 31089730 | 4.66 | 22 | 160113 | Y | MH394396 |
03D | ×8 | Schisandra henryi | Schisandraceae | 29691984 | 4.45 | 5 | 145963 | 94 bp gap | MH394365 |
03E | ×10 | Schisandra henryi | Schisandraceae | 25141160 | 3.77 | 4 | 145616 | 54 bp gap | MH394366 |
03A | ×12 | Schisandra henryi | Schisandraceae | 32511344 | 4.88 | 11 | 146031 | 18 bp gap | MH394363 |
03B | ×14 | Schisandra henryi | Schisandraceae | 29856636 | 4.48 | 9 | 145993 | 63 bp gap | MH394364 |
04D | ×8 | Schisandra henryi | Schisandraceae | 24039822 | 3.61 | 4 | 146212 | 53 bp gap | MH394369 |
04E | ×10 | Schisandra henryi | Schisandraceae | 23870902 | 3.58 | 4 | 146243 | 53 bp gap | MH394370 |
04A | ×12 | Schisandra henryi | Schisandraceae | 33190158 | 4.98 | 15 | 146218 | 63 bp gap | MH394367 |
04B | ×14 | Schisandra henryi | Schisandraceae | 30498044 | 4.57 | 6 | 145893 | 45 bp gap | MH394368 |
05D | ×8 | Phoebe neurantha | Lauraceae | 29040850 | 4.36 | 11 | 152782 | Y | MH394354 |
05E | ×10 | Phoebe neurantha | Lauraceae | 27831254 | 4.17 | 15 | 152782 | Y | MH394355 |
05A | ×12 | Phoebe neurantha | Lauraceae | 44724436 | 6.71 | 17 | 152781 | 1 bp gap | MH394352 |
05B | ×14 | Phoebe neurantha | Lauraceae | 35264634 | 5.29 | 13 | 152781 | 1 bp gap | MH394353 |
06D | ×8 | Cinnamomum bodinieri | Lauraceae | 30188820 | 4.53 | 9 | 152778 | Y | MH394417 |
06E | ×10 | Cinnamomum bodinieri | Lauraceae | 32065328 | 4.81 | 13 | 152719 | Y | MH394418 |
06A | ×12 | Cinnamomum bodinieri | Lauraceae | 24488292 | 3.67 | 7 | 152719 | Y | MH394415 |
06B | ×14 | Cinnamomum bodinieri | Lauraceae | 35035602 | 5.26 | 11 | 152719 | Y | MH394416 |
08D | ×8 | Holboellia latifolia | Lardizabalaceae | 26229946 | 3.93 | 5 | 157817 | Y | MH394377 |
08E | ×10 | Holboellia latifolia | Lardizabalaceae | 28273022 | 4.24 | 9 | 157818 | Y | MH394378 |
08A | ×12 | Holboellia latifolia | Lardizabalaceae | 33873136 | 5.08 | 13 | 157614 | 204 bp gap | MH394375 |
08B | ×14 | Holboellia latifolia | Lardizabalaceae | 34021360 | 5.1 | 10 | 157818 | Y | MH394376 |
09D | ×8 | Chloranthus erectus | Chloranthaceae | 21843512 | 3.28 | 4 | 157812 | 43 bp gap | MH394413 |
09E | ×10 | Chloranthus erectus | Chloranthaceae | 18044364 | 2.71 | 5 | 157812 | 47 bp gap | MH394414 |
09A | ×12 | Chloranthus erectus | Chloranthaceae | 30022162 | 4.5 | 13 | 157852 | Y | MH394411 |
09B | ×14 | Chloranthus erectus | Chloranthaceae | 28656686 | 4.3 | 11 | 157852 | Y | MH394412 |
10D | ×8 | Sarcandra glabra | Chloranthaceae | 18893508 | 2.83 | 5 | 158733 | 119 bp gap | MH394361 |
10E | ×10 | Sarcandra glabra | Chloranthaceae | 20662770 | 3.1 | 7 | 159007 | 22 bp gap | MH394362 |
10A | ×12 | Sarcandra glabra | Chloranthaceae | 27510166 | 4.13 | 9 | 158900 | Y | MH394360 |
10B | ×14 | Sarcandra glabra | Chloranthaceae | 29545206 | 4.43 | 9 | 158900 | Y | MH394431 |
11D | ×8 | Meconopsis racemosa | Papaveraceae | 24351884 | 3.65 | 5 | 153762 | Y | MH394401 |
11E | ×10 | Meconopsis racemosa | Papaveraceae | 29160582 | 4.37 | 5 | 153762 | Y | MH394402 |
11A | ×12 | Meconopsis racemosa | Papaveraceae | 33763340 | 5.06 | 6 | 153763 | Y | MH394399 |
11B | ×14 | Meconopsis racemosa | Papaveraceae | 35990358 | 5.4 | 4 | 153728 | 1 bp gap | MH394400 |
12D | ×8 | Macleaya microcarpa | Papaveraceae | 26265548 | 3.94 | 11 | 161064 | 48 bp gap | MH394385 |
12E | ×10 | Macleaya microcarpa | Papaveraceae | 25100372 | 3.77 | 11 | 161064 | 48 bp gap | MH394386 |
12A | ×12 | Macleaya microcarpa | Papaveraceae | 29491952 | 4.42 | 13 | 161118 | Y | MH394383 |
12B | ×14 | Macleaya microcarpa | Papaveraceae | 28462338 | 4.27 | 12 | 161110 | 2 bp gap | MH394384 |
13D | ×8 | Hodgsonia macrocarpa | Cucurbitaceae | 26886870 | 4.03 | 26 | 155027 | 1300 bp gap | MH394428 |
13E | ×10 | Hodgsonia macrocarpa | Cucurbitaceae | 34179418 | 5.13 | 16 | 154855 | 1298 bp gap | MH394429 |
13A | ×12 | Hodgsonia macrocarpa | Cucurbitaceae | 37182144 | 5.58 | 18 | 156015 | 20 bp gap | MH394426 |
13B | ×14 | Hodgsonia macrocarpa | Cucurbitaceae | 36782268 | 5.52 | 17 | 156146 | Y | MH394427 |
14D | ×8 | Malus yunnanensis | Rosaceae | 22107718 | 3.32 | 16 | 158955 | 820 bp gap | MH394389 |
14E | ×10 | Malus yunnanensis | Rosaceae | 25720160 | 3.86 | 5 | 160071 | Y | MH394390 |
14A | ×12 | Malus yunnanensis | Rosaceae | 37501036 | 5.63 | 5 | 160067 | Y | MH394387 |
14B | ×14 | Malus yunnanensis | Rosaceae | 33776058 | 5.07 | 5 | 160068 | Y | MH394388 |
15D | ×8 | Elaeagnus loureirii | Elaeagnaceae | 15195822 | 2.28 | 5 | 152196 | 8 bp gap | MH394424 |
15E | ×10 | Elaeagnus loureirii | Elaeagnaceae | 16862680 | 2.53 | 5 | 152196 | 8 bp gap | MH394425 |
15A | ×12 | Elaeagnus loureirii | Elaeagnaceae | 21511050 | 3.23 | 4 | 152199 | 5 bp gap | MH394422 |
15B | ×14 | Elaeagnus loureirii | Elaeagnaceae | 20556860 | 3.08 | 6 | 152199 | 5 bp gap | MH394423 |
16D | ×8 | Rhododendron rex subsp. fictolacteum | Ericaceae | 23623070 | 3.54 | ||||
16E | ×10 | Rhododendron rex subsp. fictolacteum | Ericaceae | 28092596 | 4.21 | ||||
16A | ×12 | Rhododendron rex subsp. fictolacteum | Ericaceae | 31352560 | 4.7 | ||||
16B | ×14 | Rhododendron rex subsp. fictolacteum | Ericaceae | 30525730 | 4.58 | ||||
17D | ×8 | Swertia bimaculata | Gentianaceae | 18303136 | 2.77 | 53 | 152808 | 266 bp gap | MH394373 |
17E | ×10 | Swertia bimaculata | Gentianaceae | 16559554 | 2.48 | 41 | 153443 | 406 bp gap | MH394374 |
17A | ×12 | Swertia bimaculata | Gentianaceae | 15877478 | 2.38 | 30 | 143977 | 9947 bp gap | MH394371 |
17B | ×14 | Swertia bimaculata | Gentianaceae | 18448302 | 2.77 | 48 | 153602 | 341 bp gap | MH394372 |
18D | ×8 | Primula sinopurpurea | Primulaceae | 22890598 | 3.43 | 5 | 151945 | 50 bp gap | MH394358 |
18E | ×10 | Primula sinopurpurea | Primulaceae | 26618684 | 3.99 | 5 | 151945 | 50 bp gap | MH394359 |
18A | ×12 | Primula sinopurpurea | Primulaceae | 24107472 | 3.62 | 3 | 151945 | 50 bp gap | MH394356 |
18B | ×14 | Primula sinopurpurea | Primulaceae | 25834066 | 3.88 | 3 | 151945 | 50 bp gap | MH394357 |
19D | ×8 | Paederia scandens | Araceae | 25307356 | 3.8 | 15 | 162267 | 247 bp gap | MH394346 |
19E | ×10 | Paederia scandens | Araceae | 24658068 | 3.7 | 7 | 162268 | 247 bp gap | MH394347 |
19A | ×12 | Paederia scandens | Araceae | 23850180 | 3.58 | 8 | 162282 | 253 bp gap | MH394344 |
19B | ×14 | Paederia scandens | Araceae | 24064764 | 3.61 | 10 | 162139 | 253 bp gap | MH394345 |
20D | ×8 | Colocasia esculenta | Araceae | 29284270 | 4.39 | 4 | 162350 | 155 bp gap | MH394430 |
20E | ×10 | Colocasia esculenta | Araceae | 25045978 | 3.77 | 5 | 162350 | 155 bp gap | MH394421 |
20A | ×12 | Colocasia esculenta | Araceae | 23560322 | 3.53 | 6 | 162414 | 155 bp gap | MH394419 |
20B | ×14 | Colocasia esculenta | Araceae | 24533656 | 3.68 | 4 | 162414 | 155 bp gap | MH394420 |
21D | ×8 | Pholidota chinensis | Orchidaceae | 21688990 | 3.25 | ||||
21E | ×10 | Pholidota chinensis | Orchidaceae | 20880950 | 3.13 | ||||
21A | ×12 | Pholidota chinensis | Orchidaceae | 23548018 | 3.53 | ||||
21B | ×14 | Pholidota chinensis | Orchidaceae | 27148284 | 4.07 | ||||
22D | ×8 | Otochilus porrectus | Orchidaceae | 15550512 | 2.33 | ||||
22E | ×10 | Otochilus porrectus | Orchidaceae | 22638772 | 3.4 | ||||
22A | ×12 | Otochilus porrectus | Orchidaceae | 21572196 | 3.23 | ||||
22B | ×14 | Otochilus porrectus | Orchidaceae | 28960858 | 4.34 | ||||
23D | ×8 | Indosasa sinica | Gramineae | 18793020 | 2.82 | 6 | 139848 | 18 bp gap | MH394381 |
23E | ×10 | Indosasa sinica | Gramineae | 17903432 | 2.69 | 10 | 139740 | Y | MH394382 |
23A | ×12 | Indosasa sinica | Gramineae | 19106404 | 2.87 | 9 | 139740 | Y | MH394379 |
23B | ×14 | Indosasa sinica | Gramineae | 19668682 | 2.95 | 8 | 139740 | Y | MH394380 |
24D | ×8 | Camellia gymnogyna | Theaceae | 17176632 | 2.58 | 4 | 156402 | Y | MH394405 |
24E | ×10 | Camellia gymnogyna | Theaceae | 24532196 | 3.68 | 7 | 156590 | Y | MH394406 |
24A | ×12 | Camellia gymnogyna | Theaceae | 26478224 | 3.97 | 4 | 156590 | Y | MH394403 |
24B | ×14 | Camellia gymnogyna | Theaceae | 29768770 | 4.47 | 4 | 156590 | Y | MH394404 |
25D | ×8 | Camellia sinensis var. assamica | Theaceae | 23291572 | 3.49 | 4 | 157028 | Y | MH394409 |
25E | ×10 | Camellia sinensis var. assamica | Theaceae | 18698814 | 2.8 | 5 | 157028 | Y | MH394410 |
25A | ×12 | Camellia sinensis var. assamica | Theaceae | 21788776 | 3.27 | 4 | 157029 | Y | MH394407 |
25B | ×14 | Camellia sinensis var. assamica | Theaceae | 26155342 | 3.92 | 8 | 157028 | Y | MH394408 |
26D | ×8 | Panicum incomtum | Gramineae | 16865102 | 2.53 | 61 | 139986 | Y | MH394350 |
26E | ×10 | Panicum incomtum | Gramineae | 20465942 | 3.07 | 21 | 139999 | Y | MH394351 |
26A | ×12 | Panicum incomtum | Gramineae | 20004364 | 3 | 18 | 139999 | Y | MH394348 |
26B | ×14 | Panicum incomtum | Gramineae | 20672642 | 3.1 | 17 | 139999 | Y | MH394349 |