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Table 4 MiddRAD-seq data summary in rice and maize

From: Development of a universal and simplified ddRAD library preparation approach for SNP discovery and genotyping in angiosperm plants

Genome information Oryza sativa Zea mays
Genome size (Mb) 383 2300
% of repeats in genome 39.11 85.00
GC content (%) 43.56 46.83
Expected information
 Enzyme pairs AvaII + MspI AvaII + MspI
 Expected RAD tag size range (bp) 460–680 500–680
 Expected no. of RAD tags 60,925 284,179
 Tags density per 100 kb 15.92 12.36
 % of tags in CDS 25.10 3.04
Observed information
 Raw reads 14,732,449 7,414,009
 Clean reads 14,146,516 7,337,556
 Observed no. of tags 66,547 290,001
 Tag average depth 212.58 25.30
 Tags per 100 kb 17.38 12.61
 Simplification ratio (%) 2.43 1.77
 % of tags in CDS 31.49 1.15
 % of tags in repeats 15.83 31.44