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Table 2 Mate pair mapping orientations on E. coli, contigs and scaffolds

From: An efficient approach to BAC based assembly of complex genomes

Orientation Reference % of pairs Median insert size (Kb)
RF E coli 99 6
Contigs 99 6
Scaffolds 97 6
FR E coli 0.3 4
Contigs 0.6 8
Scaffolds 2 98
FF/RR E coli 0.7 3
Contigs 0.8 3
Scaffolds 0.9 4