Table 2 Mate pair mapping orientations on E. coli, contigs and scaffolds
From: An efficient approach to BAC based assembly of complex genomes
Orientation | Reference | % of pairs | Median insert size (Kb) |
|---|---|---|---|
RF | E coli | 99 | 6 |
Contigs | 99 | 6 | |
Scaffolds | 97 | 6 | |
FR | E coli | 0.3 | 4 |
Contigs | 0.6 | 8 | |
Scaffolds | 2 | 98 | |
FF/RR | E coli | 0.7 | 3 |
Contigs | 0.8 | 3 | |
Scaffolds | 0.9 | 4 |