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Table 2 Multiple scale image processing tools available under the free and open software ImageJ

From: Multiscale imaging of plants: current approaches and challenges

Image processing task ImageJ plugin weblink
Image registration http://fiji.sc/TrakEM2
Landmark detection http://fiji.sc/Feature_Extraction
Wavelet filtering http://bigwww.epfl.ch/demo/fractsplines/java.html
Multiscale blob extraction http://bigwww.epfl.ch/sage/soft/Log3D/
Multiscale vessellness extraction http://www.longair.net/edinburgh/imagej/tubeness/
Nonlocal mean denoising https://code.google.com/p/ij-non-local-means/
Fractal analysis http://rsb.info.nih.gov/ij/plugins/fraclac/
Multiscale color analysis http://www.signal-image.net/2010/04/color-inspector-3d/