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Table 2 External links and cross references

From: Exploration of plant genomes in the FLAGdb++ environment

Database

Scope and targets

Website URL

ABRC

Arabidopsis biological resource center

http://abrc.osu.edu/

Arabidopsis-TF

Classification of transcription factors (At)

http://urgv.evry.inra.fr/projects/arabidopsis-TF/

Aramemnon

Membrane protein database (At, Os)

http://aramemnon.botanik.uni-koeln.de/

ATOMEdb

ORFeome resource (At)

http://urgv.evry.inra.fr/ATOMEdb

CATdb

CATMA Transcriptome database (At)

http://urgv.evry.inra.fr/CATdb

eFP Browser

Transcriptome database (At, Os, Pt)

http://www.bar.utoronto.ca/

GABI-Kat

GABI Arabidopsis T-DNA mutants

http://www.gabi-kat.de/

GenBank

DNA and protein repository at NCBI

http://www.ncbi.nlm.nih.gov/

GeneFarm

Manually annotation of families (At)

http://urgi.versailles.inra.fr/Genefarm/

Genevestigator

Transcriptome database (At)

http://www.genevestigator.com

Genoscope

Genoscope Genome Browser (Vv)

http://www.genoscope.cns.fr

IJPB

INRA Arabidopsis insertion mutants

http://dbsgap.versailles.inra.fr/portail/

InterPro

Classification of protein families

http://www.ebi.ac.uk/interpro/

JGI

DOE Joint Genome Institut (Pt)

http://www.jgi.doe.gov/

KOG

Clusters of Orthologous Groups (Pt)

http://www.ncbi.nlm.nih.gov/COG/

MAtDB

Arabidopsis genome at MIPS

http://mips.helmholtz-muenchen.de/plant/

PDB

Protein structure Data Bank

http://www.pdb.org/

PFAM

Conserved motifs in protein families

http://pfam.sanger.ac.uk/

RAP-DB

Rice Annotation Project Database

http://rapdb.dna.affrc.go.jp/

SwissProt

Manually annotation of proteins

http://www.uniprot.org/

TAIR

The Arabidopsis Information Resource

http://www.arabidopsis.org/

URGI

INRA Genome Browser (Vv)

http://urgi.versailles.inra.fr/

  1. The cross-references with complementary databases are proposed to the users in the 'Link to...' pop-up menus associated with the concerned features.