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Figure 1 | Plant Methods

Figure 1

From: A tiling microarray for global analysis of chloroplast genome expression in cucumber and other plants

Figure 1

Presentation of the selected parameters in the final microarray probe set. A. Comparison of numbers of probes not meeting each design criterion (T - Melting Temperature, D - Hamming Distance, S - Substring, H - Hairpin, C - Nucleotide Composition, 1 type (2 types, 3 types, 4 types) - probes for which 1 criterion (2, 3 or 4 criteria, respectively) are not fulfilled, Any - probes that do not meet at least one design criterion). B. Frequency distribution of probe GC content (a component of the Nucleotide Composition criterion). C. Frequency distribution of probe melting temperatures. D. Frequency distribution of minimum Hamming distance of the probes, describing the probe specificity within the cucumber chloroplast genome.

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Plant Methods

ISSN: 1746-4811