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Table 2 The number of over- and under-amplified probes

From: Statistical evaluation of transcriptomic data generated using the Affymetrix one-cycle, two-cycle and IVT-Express RNA labelling protocols with the Arabidopsis ATH1 microarray

   Number over-amplified loci Number under-amplified loci
Region Comparison Rep 1 Rep 2 Rep 3 Rep 1 Rep 2 Rep 3
MS 1-cyc vs. 2-cyc 35 20 32 143 148 127
MS IVT-E vs. 2-cyc 37 16 32 87 127 94
EZ 1-cyc vs. 2-cyc 39 46 39 119 107 112
EZ IVT-E vs. 2-cyc 38 42 35 101 85 93
  1. The number of over- and under-amplified loci for pair-wise comparisons of two-cycle vs. one-cycle and IVT-E protocols for the three replicates (Rep 1-3).