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Table 3 Number and percentage of white clover genomic sequences with homology to white clover sequences and public databases with Medicago truncatula sequences

From: Genome-wide identification of microsatellites in white clover (Trifolium repens L.) using FIASCO and phpSSRMiner

White clover
sequences NFa
White clover sequences
NCBI NT M. truncatula pseudo
M. truncatula gene index
1,698 123 (7.2%) 1,152 (67.8%) 288 (17.0%) 156 (9.2%)
  1. The e value thresholds for homology searches used were 1e-20 for GenBank and 1e-10 for the NCBI non-redundant nucleotide library (NCBI NT), M. truncatula pseudo genome, and M. truncatula gene index.
  2. a Number of contigs generated from the two SSR-enriched genomic libraries