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Table 3 Number and percentage of white clover genomic sequences with homology to white clover sequences and public databases with Medicago truncatula sequences

From: Genome-wide identification of microsatellites in white clover (Trifolium repens L.) using FIASCO and phpSSRMiner

White clover

sequences NFa

White clover sequences

GenBank

NCBI NT

M. truncatula pseudo

genome

M. truncatula gene index

1,698

123 (7.2%)

1,152 (67.8%)

288 (17.0%)

156 (9.2%)

  1. The e value thresholds for homology searches used were 1e-20 for GenBank and 1e-10 for the NCBI non-redundant nucleotide library (NCBI NT), M. truncatula pseudo genome, and M. truncatula gene index.
  2. a Number of contigs generated from the two SSR-enriched genomic libraries
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Plant Methods

ISSN: 1746-4811