Figure 3

Visualization of the relationship between the "carbon fixation pathway" and the gene expression profile which reduces the transcription. The whole screen shows cluster ID 0-1 (the yellow frame on the left) after it was specified and ranked. The upper left display screen shows the data of the first principal ingredient set to 11 and clustered by BL-SOM in OSML Editor. The colour of the classified clusters indicates the mean values of the probe data included in the cluster in each experiment. Each yellow line in the cluster represents an expression profile of the probes in the cluster. The upper right display screen shows the details of the hierarchy of OSML data. The middle right display screen is the "carbon fixation pathway" by OSML Editor and the array probe and array data correspond to specific enzymes and array probes, respectively. (Pathway View) The enzyme is presented as a light blue circle frame and the microarray probe corresponding to the enzyme is shown under each corresponding enzyme. The metabolites are shown in black square frame. The display illustrates the microarray data in the framed array probe. The bottom display screen provides details on the ranking results of clustering from the upper left display (cluster ID 0-1). The ranking is displayed on the right and the left is a Venn diagram of "carbon fixation pathway" and the probes (cluster 0-1). The "carbon fixation pathway" shown in the upper left corner of Figure 3 is at the top of the ranking. In the "carbon fixation pathway", 21 out of 81 probes are included in cluster 0-1.