From: Maximizing efficiency in sunflower breeding through historical data optimization
Trait | TRS Optimization Method | Average TRS size and gain in predictive ability both expressed as a percentage relative to the entire candidate set | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
type | Size | Composition | Test Set year 6 | Test Set year 7 | Globally | |||||||
Mean | sd | TRS size | Mean | sd | TRS size | Mean | sd | TRS size | ||||
YLD | Genetic | Min_GRM | Avg_GRM_self | 98.22 | 2.37 | 79.29 | 98.39 | 2.24 | 79.81 | 98.31 | 2.30 | 79.55 |
Min_GRM | Avg_GRM_MinMax | 98.03 | 2.45 | 79.29 | 98.26 | 2.84 | 79.81 | 98.14 | 2.67 | 79.55 | ||
Min_GRM | Avg_GRM | 96.82 | 2.44 | 79.29 | 97.01 | 3.28 | 79.81 | 96.92 | 2.92 | 79.55 | ||
Min_GRM | Min_GRM | 97.64 | 3.29 | 79.29 | 95.44 | 3.22 | 79.81 | 96.54 | 3.46 | 79.55 | ||
Min_GRM | PCA_CDmean | 98.67 | 2.80 | 79.29 | 97.94 | 2.26 | 79.81 | 98.31 | 2.56 | 79.55 | ||
Mixed | Min_GRM | PLS_CDmean | 99.13 | 2.24 | 79.29 | 98.56 | 2.54 | 79.81 | 98.85 | 2.43 | 79.55 | |
Tails_GEGVs_sd1 | Tails_GEGVs | 101.41 | 2.24 | 60.62 | 98.95 | 1.22 | 60.40 | 100.18 | 2.17 | 60.51 | ||
Manually set 60% | Tails_GEGVs | 102.58 | 2.48 | 60.00 | 98.21 | 1.51 | 60.00 | 100.39 | 3.00 | 60.00 | ||
Phenotypic | Min_GRM | Tails | 98.94 | 2.44 | 79.29 | 98.85 | 1.88 | 79.81 | 98.90 | 2.14 | 79.55 | |
Min_GRM | Random | 98.62 | 2.44 | 79.29 | 97.90 | 2.46 | 79.81 | 98.26 | 2.49 | 79.55 | ||
GM | Genetic | Min_GRM | Avg_GRM_self | 98.80 | 1.56 | 79.29 | 98.86 | 2.12 | 79.81 | 98.83 | 1.89 | 79.55 |
Min_GRM | Avg_GRM_MinMax | 98.76 | 1.48 | 79.29 | 98.25 | 2.48 | 79.81 | 98.51 | 2.10 | 79.55 | ||
Min_GRM | Avg_GRM | 99.27 | 4.28 | 79.29 | 96.98 | 2.70 | 79.81 | 98.13 | 3.66 | 79.55 | ||
Min_GRM | Min_GRM | 98.43 | 1.65 | 79.29 | 97.70 | 1.57 | 79.81 | 98.06 | 1.65 | 79.55 | ||
Min_GRM | PCA_CDmean | 98.44 | 1.82 | 79.29 | 98.37 | 2.65 | 79.81 | 98.40 | 2.31 | 79.55 | ||
Mixed | Min_GRM | PLS_CDmean | 98.25 | 1.50 | 79.29 | 98.21 | 2.37 | 79.81 | 98.23 | 2.02 | 79.55 | |
Tails_GEGVs_sd1 | Tails_GEGVs | 95.11 | 2.80 | 56.19 | 93.85 | 3.50 | 59.36 | 94.48 | 3.23 | 57.77 | ||
Manually set 60% | Tails_GEGVs | 96.56 | 1.23 | 60.00 | 95.21 | 3.14 | 60.00 | 95.89 | 2.53 | 60.00 | ||
Phenotypic | Min_GRM | Tails | 98.68 | 1.07 | 79.29 | 100.37 | 1.57 | 79.81 | 99.52 | 1.61 | 79.55 | |
Min_GRM | Random | 98.56 | 1.59 | 79.29 | 98.70 | 2.84 | 79.81 | 98.63 | 2.36 | 79.55 | ||
OIL | Genetic | Min_GRM | Avg_GRM_self | 98.62 | 1.53 | 79.29 | 98.84 | 2.28 | 79.81 | 98.73 | 1.98 | 79.55 |
Min_GRM | Avg_GRM_MinMax | 98.71 | 1.57 | 79.29 | 98.91 | 2.36 | 79.81 | 98.81 | 2.04 | 79.55 | ||
Min_GRM | Avg_GRM | 95.69 | 5.11 | 79.29 | 100.54 | 2.94 | 79.81 | 98.12 | 4.83 | 79.55 | ||
Min_GRM | Min_GRM | 96.40 | 1.80 | 79.29 | 100.21 | 1.65 | 79.81 | 98.30 | 2.58 | 79.55 | ||
Min_GRM | PCA_CDmean | 98.99 | 1.44 | 79.29 | 99.12 | 2.08 | 79.81 | 99.05 | 1.82 | 79.55 | ||
Mixed | Min_GRM | PLS_CDmean | 98.51 | 1.58 | 79.29 | 99.00 | 2.15 | 79.81 | 98.76 | 1.93 | 79.55 | |
Tails_GEGVs_sd1 | Tails_GEGVs | 94.26 | 2.86 | 62.03 | 96.38 | 2.49 | 62.07 | 95.32 | 2.87 | 62.05 | ||
Manually set 60% | Tails_GEGVs | 94.34 | 2.37 | 60.00 | 96.42 | 2.21 | 60.00 | 95.38 | 2.51 | 60.00 | ||
Phenotypic | Min_GRM | Tails | 98.90 | 1.11 | 79.29 | 99.62 | 1.62 | 79.81 | 99.26 | 1.44 | 79.55 | |
Min_GRM | Random | 98.18 | 1.66 | 79.29 | 98.74 | 2.34 | 79.81 | 98.46 | 2.07 | 79.55 |