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Table 3 Oligonucleotides used in this study

From: Efficient virus-induced gene silencing in apple, pear and Japanese pear using Apple latent spherical virus vectors

Primers

Sequences (5' - 3')

Genebank accession no.

Primers used for amplification of genes from apple

   rbcS(+)

1GACGAGAAAGCAGAGAGAGA20

L24497

   rbcS(-)

500CGATGATACGGATGAAGGAT481

L24497

   CPN60α(+)

1248ACTAATGACTCWGCTGGYGA1267

DL175273

   CPN60α(-)

2637GTWGCRTTCTTKGCATCCTC2618

DL175273

   actin(+)

1TCCTTCGTCTTGACCTTGCT20

DQ822466

   actin(-)

245ACGGAATCTCTCAGCTCCAA226

DQ822466

   EF-1α(+)

45ATGACCCTGCCAAGGAGGCT64

U80268

   EF-1α(-)

644GAATCGACACAACATAAACT625

U80268

   EXP2(+)

52ATGGCTTGAGCTGCGGGTCT71

AY083167

   EXP2(-)

651ACAATTCACCCTTCACCATT632

AY083167

   PIP1b(+)

84ATGGAAGGCAAGGAAGAGGA103

AB100870

   PIP1b(-)

673AAAACGGTGTAGACGAGGAC654

AB100870

Primers used for ALSV vector construction

   rbcSXho(+)

TACATCTCGAG 50 GGTACCGTGGCTACAGTT67

   rbcS201Bam(-)

TACATGGATCC 250 AGGAAGGTAAGAGAGGGT233

   rbcS102Bam(-)

TACATGGATCC 151 ATTGCTTTTTCTGGTGAC134

   rbcS51Bam(-)

TACATGGATCC 100 TGGAGCAACCATTCTGGC83

   CPN60αXho(+)

TACATCTCGAG 1864 ACTGACCAGAAGATTTCA1871

   CPN60αBam(-)

TACATGGATCC 2064 GAGGAGAGCCTTTCTCCG2047

   actinXho(+)

TACATCTCGAG 15 CTTGCTGGTCGTGACCTC32

   actinBam(-)

TACATGGATCC 215 TTGGCCATCGGGAAGCTC198

   EF-1αXho(+)

TACATCTCGAG 179 CTTACCAAGGTTGACAGG196

   EF-1αBam(-)

TACATGGATCC 379 CTCAACGCTCTTGATAAC362

   EXP2Xho(+)

TACATCTCGAG 252 AGAGCTGGAATTGTTCCT269

   EXP2Bam(-)

TACATGGATCC 452 CCAGTTCTGGCCCCAGTT435

   PIP1bXho(+)

TACATCTCGAG 405 ACCGCCGGCATCTCCGGT422

   PIP1bBam(-)

TACATGGATCC 605 ATGGGCAACAGAGTTGGC588

   MdTFLXho(+)

TACATCTCGAG 40 ATGAAAAGAGCCTCGGAG57

   MdTFLBam(-)

TACATGGATCC 204 CACCAAAGTAAAGAAAGA223

  1. Numbers on sequences refer to positions in genes.
  2. Restriction sites of Xho I and Bam HI were underlined