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Table 3 Analysis of SNP density obtained with different number of reads for two hypothetical biparental crosses

From: 3D-GBS: a universal genotyping-by-sequencing approach for genomic selection and other high-throughput low-cost applications in species with small to medium-sized genomes

Crossing

Closest accessions

Farthest accessions

Closest accessions

Farthest accessions

Closest accessions

Farthest accessions

Reads per sample (K)

100

200

300

SNP count

426

677

630

1165

669

1325

SNP/1 Mb

0.5

0.7

0.7

1.2

0.7

1.4

SNP/cM

0.21

0.33

0.31

0.57

0.33

0.65

  1. The genetically closest and farthest accessions were QS4054 and OAC Bright and, QS5008 and QS4067, respectively
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Plant Methods

ISSN: 1746-4811