Table 1 Nucleotide (nt) and amino acid (aa) identities (%) of genomic coding sequences of the cucumber Bulgarian latent virus Taiwan isolate (CBLV-TW) compared with those of different CBLV isolates and other tombusviruses
From: Identification of an emerging cucumber virus in Taiwan using Oxford nanopore sequencing technology
Virus a | Genome (nt%) | RdRp | CP | MP | P19 | ||||
|---|---|---|---|---|---|---|---|---|---|
nt% | aa% | nt% | aa% | nt% | aa% | nt% | aa% | ||
CBLV-TW | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 |
CBLV-W12-101 | 97.0 | 97.0 | 98.4 | 95.8 | 96.8 | 98.7 | 99.4 | 98.6 | 97.0 |
CBLV-Bulgaria | 97.2 | 97.2 | 98.1 | 95.9 | 97.3 | 98.9 | 99.4 | 98.6 | 96.4 |
AMCV | 66.5 | 72.1 | 76.5 | 51.8 | 36.7 | 81.8 | 82.5 | 82.3 | 65.7 |
CIRV | 66.6 | 72.3 | 76.6 | 51.4 | 34.9 | 81.1 | 83.1 | 81.9 | 65.7 |
CNV | 67.1 | 72.5 | 76.6 | 53.5 | 38.6 | 78.9 | 81.6 | 78.9 | 61.3 |
CymRSV | 66.1 | 71.8 | 77.0 | 50.8 | 36.1 | 78.6 | 78.8 | 79.0 | 62.2 |
EMCV | 66.0 | 72.0 | 75.5 | 50.9 | 35.9 | 78.3 | 81.2 | 79.4 | 61.6 |
GALV | 66.0 | 71.9 | 77.2 | 50.9 | 34.8 | 71.2 | 74.3 | 79.6 | 62.2 |
MPV | 66.7 | 71.9 | 76.5 | 53.0 | 38.6 | 79.8 | 82.0 | 80.2 | 61.6 |
PLCV | 65.4 | 67.2 | 70.4 | 50.5 | 35.4 | 81.6 | 82.5 | 82.3 | 64.5 |
PNSV | 65.3 | 66.3 | 70.2 | 51.9 | 37.3 | 79.8 | 82.0 | 80.3 | 62.2 |
TBSV | 65.7 | 70.8 | 76.9 | 51.2 | 33.7 | 81.1 | 82.0 | 81.5 | 61.6 |
HaRV | –b | – | – | 52.1 | 36.0 | 78.4 | 80.0 | 79.0 | 60.7 |
LFDV | – | – | – | 51.3 | 362 | – | – | – | – |
NRV | – | – | – | 52.1 | 39.8 | – | – | – | – |
PAMV | – | – | – | 52.4 | 36.8 | – | – | - | – |
SWV | – | – | – | 52.3 | 36.0 | – | – | – | – |