From: Species-specific basecallers improve actual accuracy of nanopore sequencing in plants
Basecaller model | P. stellatum (R9.4.1) | X. johnsonii | ||||
---|---|---|---|---|---|---|
Quality score | Read identity | R2 | Quality score | Read identity | R2 | |
Guppy 5 super accurate | 86.35%  ± 45.92% | 91.96%  ± 3.83% | 0.777 | 90.16%  ± 48.12% | 94.15%  ± 3.12% | 0.801 |
Guppy 6 super accurate | 86.68%  ± 46.75% | 91.96%  ± 3.83% | 0.777 | 90.47%  ± 48.75% | 94.15%  ± 3.12% | 0.801 |
Guppy 6 super accurate—plant | 84.73%  ± 50.92% | 91.47% ± 3.50% | 0.850 | 92.81%  ± 54.60% | 96.18% ± 3.50% | 0.900 |
Reciprocal species-specific | 93.00%  ± 50.83% | 92.98%  ± 3.16% | 0.577 | 95.55%  ± 45.02% | 94.43%  ± 2.69% | 0.787 |
Species-specific | 94.83%  ± 47.35% | 93.24%  ± 3.00% | 0.648 | 95.59%  ± 48.46% | 95.16%  ± 2.74% | 0.805 |