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Fig. 6 | Plant Methods

Fig. 6

From: A technical guide to TRITEX, a computational pipeline for chromosome-scale sequence assembly of plant genomes

Fig. 6

Impact of guide map density on assembly quality. Hi-C maps guided by genetic maps of different sizes were constructed. Results for chromosome 8 are shown. Hi-C contact matrices (Aā€“C). Collinearity of Hi-C maps guided by the maize RefGen_v5 reference genomes (Dā€“F). Collinearity of the Hi-C maps and their underlying guide maps (Gā€“I). The headers of each column report the downsampling levels, the number of markers in the downsampled guide maps, the marker counts on chromosome 8 inside parenthesis, and the correlation coefficients between marker positions in the Hi-C map and the reference genome

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