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Fig. 5 | Plant Methods

Fig. 5

From: A technical guide to TRITEX, a computational pipeline for chromosome-scale sequence assembly of plant genomes

Fig. 5

Impact of Hi-C data density on assembly quality. Hi-C maps were constructed from downsampled Hi-C matrices. Results for chromosome 8 are shown. Hi-C contact matrices (Aā€“C). Collinearity of Hi-C maps guided by the maize RefGen_v5 reference genomes (Dā€“F). Collinearity of the Hi-C maps and their underlying guide maps. The header of each column reports the downsampling level, the number of Hi-C links after thinning, how many of these are on chromosome 8 (inside parenthesis), and the correlation coefficient between marker positions in the Hi-C map and the reference genome

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