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Fig. 2 | Plant Methods

Fig. 2

From: A technical guide to TRITEX, a computational pipeline for chromosome-scale sequence assembly of plant genomes

Fig. 2

Manual curation in the TRITEX’s correct-map-inspect cycle. A The Hi-C contacts show a pattern indicative of an inversion in the terminal contig. The orientation is swapped in the Excel table and a new Hi-C matrix is computed with the updated configuration. The revised Hi-C matrix has fewer off-diagonal signals. B Hi-C contacts show a pattern indicative of a misplaced contig. The order of the final two rows is reversed in the Excel table and the Hi-C matrix is computed with the new configuration. The revised Hi-C matrix has fewer off-diagonal signals

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Plant Methods

ISSN: 1746-4811