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Table 3 Number of SNPs for wild E. angustifolia samples

From: De novo assembly provides new insights into the evolution of Elaeagnus angustifolia L.

Code ID

Sample ID

SNP number

Transition

Transversion

Ti/Tv

Heterozygosity

Homozygosity

Het-ratio (%)

R01

1583

3,097,175

2,110,179

986,996

2.13

1,412,964

1,684,211

45.62

R02

1619

3,223,761

2,197,723

1,026,038

2.14

1,492,655

1,731,106

46.30

R03

1684

3,094,736

2,108,611

986,125

2.13

1,417,978

1,676,758

45.81

R04

1697

3,021,352

2,057,327

964,025

2.13

1,417,892

1,603,460

46.92

R05

1726

3,045,841

2,075,585

970,256

2.13

1,256,764

1,789,077

41.26

R06

1758

3,193,315

2,178,336

1,014,979

2.14

1,442,262

1,751,053

45.16

R07

1784

3,225,579

2,198,583

1,026,996

2.14

1,405,876

1,819,703

43.58

R08

1811

3,108,956

2,117,042

991,914

2.13

1,537,532

1,571,424

49.45

R09

1857

3,022,369

2,058,271

964,098

2.13

1,311,017

1,711,352

43.37

R10

2063

3,028,547

2,060,171

968,376

2.12

1,379,687

1,648,860

45.55

R11

2106

3,223,275

2,197,798

1,025,477

2.14

1,617,799

1,605,476

50.19

R12

2216

3,115,254

2,122,083

993,171

2.13

1,369,366

1,745,888

43.95

  1. In a diploid, if a certain SNP site on homologous chromosomes is the same base, the SNP site is referred to as a homozygous SNP site. If the SNP loci on homologous chromosomes contain different types of bases, the SNP locus is referred to as a heterozygous SNP locus. Greater numbers of homozygous SNPs correspond to greater differences between samples and the reference genome. Greater numbers of heterozygous SNPs correspond to higher degrees of heterozygosity
  2. number number of SNPs detected; Transition number of SNPs of the conversion type; Transversion number of SNPs of transversion type; Ti/Tv the ratio of SNPs of conversion to transversion type; Heterozygosity number of heterozygous SNPs; Homozygosity number of homozygous SNPs; Het-ratio the ratio of heterozygous SNPs