Fig. 5

a Sunflower shade avoidance setup. The blue dot on the first plant on the left represents the centre of the plant. The trajectory of this point (circumnutations)—a clockwise motion—as predicted by the model trained on 20 user labelled frames is shown in b. c Arabidopsis Gravitropism setup with the numbers representing the individuals as plotted in d. In d are plotted the tip angle of the shoots of the AG video analysis for each of the individuals in the video for the models trained on 20 user labelled frames. e Arabidopsis Phototropism setup, the blue square marks the plant whose shoot angles are tracked in f. f Comparison of the shoot angles for ID 2 in the AP video analysis across frames, extracted using RootStem Extractor (dark purple line) and using SLEAP from the of the model trained on 20 user labelled frames (green line). Please note that angles were calculated between point 2 and 3 for SLEAP (see Fig. 2) but were averaged along the whole upper shoot for Root Extractor. We used a rolling mean across 5 frames to smooth the angles calculated from SLEAP both in d and f