Table 2 Significantly enriched GO terms of the 2000 core reference genes candidates of Vitis vinifera cv. Cabernet Franc
ID code | Term | Gene number | P-value | FDR |
|---|---|---|---|---|
GO biological process | ||||
 GO:0006412 | Translation | 95 | 1.26E−19 | 7.17E−17 |
 GO:0002181 | Cytoplasmic translation | 23 | 1.12E−11 | 3.20E−09 |
 GO:0006334 | Nucleosome assembly | 17 | 3.62E−07 | 6.87E−05 |
 GO:0006446 | Regulation of translational initiation | 11 | 2.66E−06 | 3.25E−04 |
 GO:0001731 | Formation of translation preinitiation complex | 12 | 2.86E−06 | 3.25E−04 |
 GO:0015991 | ATP hydrolysis coupled proton transport | 14 | 1.25E−05 | 0.00118285 |
 GO:0000027 | Ribosomal large subunit assembly | 13 | 4.62E−05 | 0.0037529 |
 GO:0006099 | Tricarboxylic acid cycle | 12 | 6.41E−05 | 0.00456226 |
 GO:0006457 | Protein folding | 29 | 1.04E−04 | 0.00655506 |
 GO:0043161 | Proteasome-mediated ubiquitin-dependent protein catabolic process | 30 | 1.44E−04 | 0.00760634 |
 GO:0006511 | Ubiquitin-dependent protein catabolic process | 18 | 1.47E−04 | 0.00760634 |
GO molecular function | ||||
 GO:0003735 | Structural constituent of ribosome | 118 | 5.84E−32 | 2.45E−29 |
 GO:0003743 | Translation initiation factor activity | 28 | 7.11E−15 | 1.49E−12 |
 GO:0000166 | Nucleotide binding | 52 | 1.84E−12 | 2.57E−10 |
 GO:0004298 | Threonine-type endopeptidase activity | 14 | 1.13E−10 | 1.18E−08 |
 GO:0003723 | RNA binding | 55 | 7.97E−08 | 6.68E−06 |
 GO:0003676 | Nucleic acid binding | 47 | 1.65E−05 | 0.00115072 |
 GO:0046961 | Proton-transporting ATPase activity, rotational mechanism | 11 | 4.34E−05 | 0.00259685 |
 GO:0003746 | Translation elongation factor activity | 10 | 1.80E−04 | 0.00885122 |
 GO:0031625 | Ubiquitin protein ligase binding | 16 | 1.90E−04 | 0.00885122 |
GO cellular component | ||||
 GO:0022625 | Cytosolic large ribosomal subunit | 61 | 1.44E−34 | 2.85E−32 |
 GO:0022627 | Cytosolic small ribosomal subunit | 31 | 1.99E−15 | 1.96E−13 |
 GO:0033290 | Eukaryotic 48S preinitiation complex | 13 | 6.26E−08 | 4.11E−06 |
 GO:0016282 | Eukaryotic 43S preinitiation complex | 12 | 1.23E−07 | 6.08E−06 |
 GO:0005747 | Mitochondrial respiratory chain complex I | 11 | 2.31E−07 | 7.58E−06 |
 GO:0005852 | Eukaryotic translation initiation factor 3 complex | 11 | 2.31E−07 | 7.58E−06 |
 GO:0000786 | Nucleosome | 19 | 3.37E−07 | 9.47E−06 |
 GO:0005737 | Cytoplasm | 145 | 1.73E−06 | 4.26E−05 |
 GO:0019773 | Proteasome core complex, alpha-subunit complex | 8 | 4.01E−06 | 8.77E−05 |
 GO:0005829 | Cytosol | 74 | 8.02E−05 | 0.00157964 |
 GO:0030687 | Preribosome, large subunit precursor | 12 | 5.62E−04 | 0.00959393 |
 GO:0071004 | U2-type prespliceosome | 7 | 5.84E−04 | 0.00959393 |