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Table 3 Comparison of the runtime of different GOMAP steps on PSC Bridges Cluster

From: Gene Ontology Meta Annotator for Plants (GOMAP)

Num

Step

Description

Depends On

Nodes

B73v4

Mo17

PH207

W22

1

Sseqsim

Runs sequence similarity steps

NA

1

2h51m

2h45m

2h40m

3h41m

2

Domain\({}^{1}\)

Run InterProScan5

NA

10

5h16m

4h40m

4h49m

4h51m

3

Mixmeth-blast\({}^{1}\)

Run the BLAST step against UniProt

NA

10

15h55m

14h54m

14h49m

15h51m

4

Fanngo

Run FANN-GO

NA

1

2h24m

4h20m

4h40m

4h49m

5

Mixmeth-preproc

Convert output from UniProt BLAST and Run HMMER

3

1

4h30m

4h26m

3h16m

5h57m

6

Mixmeth

Submit jobs to Argot2.5 webserver and Run PANNZER

5

1

2h40m

2h25m

2h20m

2h11m

7

Aggregate

Combine all GO annotations, clean, and generate aggregate dataset

1,2,4,6

1

0h10m

0h10m

0h10m

0h10m

  1. \({}^{1}\)These steps have been parallelized to be run on MPI based HPC workload manager