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Table 2 Average statistics of the K-seq results of the three assayed species

From: K-seq, an affordable, reliable, and open Klenow NGS-based genotyping technology

Species Dog Wheat 6N Tomato
Samples 6 3 18
Reads 3–50 millions 0.8–1.8 millions 1.4–9 millions
% sequence quality > 30 average 96.33 96.87 96.88
% mapping properly average 95.92 94.43 92.76
mapping properly q > 57 average 89.93 36.16 71.23
No SNPs 271,704 5047 262,947
% call rate 74.9 78 69.2
Filtered SNPs 20,648 655 7122
Filtered SNPs  % call rate 78.7 77.7 98.1