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Table 2 Average statistics of the K-seq results of the three assayed species

From: K-seq, an affordable, reliable, and open Klenow NGS-based genotyping technology

Species

Dog

Wheat 6N

Tomato

Samples

6

3

18

Reads

3–50 millions

0.8–1.8 millions

1.4–9 millions

% sequence quality > 30 average

96.33

96.87

96.88

% mapping properly average

95.92

94.43

92.76

mapping properly q > 57 average

89.93

36.16

71.23

No SNPs

271,704

5047

262,947

% call rate

74.9

78

69.2

Filtered SNPs

20,648

655

7122

Filtered SNPs  % call rate

78.7

77.7

98.1