Table 1 Comparative table of common genotype methods
From: K-seq, an affordable, reliable, and open Klenow NGS-based genotyping technology
Cost | RNA handling | Patented | Targeted | Predesign platform | |
|---|---|---|---|---|---|
WGS | High | No | No | Yes | No |
RNAseq | High | Yes | No | No | No |
Exome sequecing | High | No | No | No | Yes |
Amplicon sequecing | High | No | No | Yes | Yes |
GBS | Low | No | Yes | No | No |
DArTseq | Low | No | Yes | No | No |
rAmpSeq | Low | No | No | No | No |
K-Seq | Low | No | No | No | No |
SNP microarrays | Low | No | Yes | Yes | Yes |
KASP | Low | No | Yes | Yes | Yes |
SPET | Low | No | Yes | Yes | Yes |
Seq-SNP | Low | No | Yes | Yes | Yes |
Ion AmpliSeq technology | Low | No | Yes | Yes | Yes |