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Table 2 Number of called peaks and FRiP value under the same sequencing depth as indicated

From: Efficient chromatin profiling of H3K4me3 modification in cotton using CUT&Tag

Sample

6 M

8 M

10 M

12 M

14 M

16 M

24 M

CUT&Tag_H3K4me3_rep1

42,367 (0.70)

45,417 (0.72)

47,189 (0.74)

–

–

–

–

CUT&Tag_H3K4me3_rep2

46,779 (0.66)

49,775 (0.68)

53,140 (0.70)

55,667 (0.71)

56,331 (0.72)

–

–

CUT&Tag_IgG

1,082 (0.44)

1,119 (0.44)

1,135 (0.44)

1,159 (0.44)

1,187 (0.44)

–

–

ChIP_H3K4me3

18,024 (0.11)

23,411 (0.13)

27,491 (0.15)

30,898 (0.16)

33,543 (0.17)

35,495 (0.18)

40,859 (0.20)

ChIP_mock

602 (0.01)

843 (0.01)

1,029 (0.01)

1,317 (0.01)

1,682 (0.01)

–

–

  1. Data were generated by random sampling of clean reads from the NGS fastq files. FRiP (Fraction of reads in peaks) [15] values which act as an indicator of a signal-to-noise ratio were provided within the brackets.
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Plant Methods

ISSN: 1746-4811