Table 1 NGS data summary of CUT&Tag-seq
From: Efficient chromatin profiling of H3K4me3 modification in cotton using CUT&Tag
Sample name | Raw base (G) | Clean base (G) | Raw reads | Clean reads | Mapped reads (% of clean reads) | Unique mapped reads (% of mapped reads) | Unique deduplicated reads (% of unique mapped reads) |
|---|---|---|---|---|---|---|---|
CUT&Tag_H3K4me3_rep1 | 3.39 | 3.30 | 11,301,203 | 11,014,206 | 10,613,503 (96%) | 10,405,490 (98%) | 8,358,016 (80%) |
CUT&Tag_H3K4me3_rep2 | 7.00 | 4.70 | 23,331,123 | 15,659,491 | 15,297,385 (98%) | 14,779,742 (97%) | 10,706,214 (72%) |
CUT&Tag_IgG | 7.26 | 4.81 | 24,191,937 | 16,044,295 | 14,160,416 (88%) | 9,666,045 (68%) | 770,447 (8%) |
ChIP_H3K4me3 | 7.66 | 7.60 | 25,526,344 | 25,343,026 | 23,173,732 (91%) | 22,052,284 (95%) | 12,604,105 (57%) |
ChIP_mock | 9.99 | 9.92 | 33,289,788 | 33,071,131 | 31,341,880 (95%) | 28,311,798 (90%) | 16,363,867 (58%) |