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Table 1 Sequencing and assembly data when length fraction and similarity fraction parameters were set to 80 and 90 respectively during read mapping in the chloroplast genomes of eight Chenopod species

From: Methods of analysis of chloroplast genomes of C3, Kranz type C4 and Single Cell C4 photosynthetic members of Chenopodiaceae

Variable Species
A. retroflexus B. cycloptera B. muricata B. sinuspersici H. ammodendron S. aralocaspica S. eltonica S. maritima
Total number of reads 94,491,120 73,061,587 61,098,096 80,215,373 81,126,072 86,825,544 66,358,800 87,411,736
Mean read length (nt) 78.98 79.04 79.44 79.66 78.5 78.83 78.35 79.88
Minimum coverage (bases) 22 12 37 39 12 55 25 33
Maximum coverage (bases) 29,721 6,135 23,533 15,558 15,284 23,266 14,652 6,991
Average coverage (bases) 3,649.67 1,553.12 3,204.28 5,998.08 1,357.20 4,864.44 1,591.56 4,111.85
Total (%) of reads assemble to genome 7.37 4.12 10.01 14.39 3.44 10.42 4.55 8.95