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Table 2 QTLs identified for plant height, ear height and leaf angle using a high-density genetic map

From: All-in-one sequencing: an improved library preparation method for cost-effective and high-throughput next-generation sequencing

Traita

Year

Chromosome

QTL

Location (cM)

Region (Mb)

LODb

R2 (%)c

Addictive effectd

PH

2016

3

qPH3a

36.0–44.9

200.8–210.7

3.4

10.0

5.1

2016

3

qPH3b

95.4–100.8

6.9–9.7

3.5

12.3

− 5.8

2017

4

qPH4

74.6–81.8

23.0–78.4

3.3

9.9

5.2

2017

6

qPH6a

81.6–87.7

37.8–91.6

2.8

8.3

− 5.1

2017

6

qPH6b

87.7–93.2

15.1–37.8

4.0

12.4

− 6.2

2016

8

qPH8a

106.4–110.6

12.7–13.5

3.7

11.2

− 6.4

2017

8

qPH8b

123.4–139.8

1.4–5.1

2.6

7.5

− 4.3

EH

2017

3

qEH3

46.3–56.4

183.2–199.6

3.2

9.3

− 3.7

2016

4

qEH4

33.1–42.3

184.8–200.8

3.2

10.3

− 4.5

2017

5

qEH5

21.0–28.7

210.5–215.6

3.6

10.4

− 4.4

2017

10

qEH10

88.2–94.3

148.6–149.8

4.8

15.4

− 5.1

LA

2016, 2017

1

qLA1a

120.3–132.3

24.4–68.6

3.0–10.6

6.7–26.8

− (2.4–4.1)

2016

1

qLA1b

133.6–135.0

19.3–24.4

5.7

14.9

− 3

2016

1

qLA1c

141.5–149.3

11.6–15.2

3.1

6.9

− 2.3

2016, 2017

2

qLA2a

120.0–122.4

11.3–13.0

3.6–4.7

8.7–11.7

− (2.3–2.7)

2016, 2017

2

qLA2b

128.0–143.4

1.9–9.1

4.6–8.4

12.4–20.8

− (2.7–3.6)

2016

3

qLA3

88.2–90.7

12.0–20.6

5.4

11.0

− 2.6

2016

7

qLA7a

44.2–49.0

131.2–142.0

3.9

8.1

2.4

2016

7

qLA7b

52.6–59.8

110.8–126.7

3.7

7.9

2.2

  1. aTrait is the name of the component of the plant architecture: PH for plant height, EH for ear height, LA for leaf angle
  2. bLOD means logarithm of odds
  3. cR2 indicated the percentage of phenotypic variation explained by QTL
  4. dPositive or negative addictive effect value indicates that the allele from Lx9801 or CML486 increases the phenotypic value, respectively