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Table 2 QTLs identified for plant height, ear height and leaf angle using a high-density genetic map

From: All-in-one sequencing: an improved library preparation method for cost-effective and high-throughput next-generation sequencing

Traita Year Chromosome QTL Location (cM) Region (Mb) LODb R2 (%)c Addictive effectd
PH 2016 3 qPH3a 36.0–44.9 200.8–210.7 3.4 10.0 5.1
2016 3 qPH3b 95.4–100.8 6.9–9.7 3.5 12.3 − 5.8
2017 4 qPH4 74.6–81.8 23.0–78.4 3.3 9.9 5.2
2017 6 qPH6a 81.6–87.7 37.8–91.6 2.8 8.3 − 5.1
2017 6 qPH6b 87.7–93.2 15.1–37.8 4.0 12.4 − 6.2
2016 8 qPH8a 106.4–110.6 12.7–13.5 3.7 11.2 − 6.4
2017 8 qPH8b 123.4–139.8 1.4–5.1 2.6 7.5 − 4.3
EH 2017 3 qEH3 46.3–56.4 183.2–199.6 3.2 9.3 − 3.7
2016 4 qEH4 33.1–42.3 184.8–200.8 3.2 10.3 − 4.5
2017 5 qEH5 21.0–28.7 210.5–215.6 3.6 10.4 − 4.4
2017 10 qEH10 88.2–94.3 148.6–149.8 4.8 15.4 − 5.1
LA 2016, 2017 1 qLA1a 120.3–132.3 24.4–68.6 3.0–10.6 6.7–26.8 − (2.4–4.1)
2016 1 qLA1b 133.6–135.0 19.3–24.4 5.7 14.9 − 3
2016 1 qLA1c 141.5–149.3 11.6–15.2 3.1 6.9 − 2.3
2016, 2017 2 qLA2a 120.0–122.4 11.3–13.0 3.6–4.7 8.7–11.7 − (2.3–2.7)
2016, 2017 2 qLA2b 128.0–143.4 1.9–9.1 4.6–8.4 12.4–20.8 − (2.7–3.6)
2016 3 qLA3 88.2–90.7 12.0–20.6 5.4 11.0 − 2.6
2016 7 qLA7a 44.2–49.0 131.2–142.0 3.9 8.1 2.4
2016 7 qLA7b 52.6–59.8 110.8–126.7 3.7 7.9 2.2
  1. aTrait is the name of the component of the plant architecture: PH for plant height, EH for ear height, LA for leaf angle
  2. bLOD means logarithm of odds
  3. cR2 indicated the percentage of phenotypic variation explained by QTL
  4. dPositive or negative addictive effect value indicates that the allele from Lx9801 or CML486 increases the phenotypic value, respectively