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Table 1 Target table of Brassica napus dataset in R

From: DiCoExpress: a tool to process multifactorial RNAseq experiments from quality controls to co-expression analysis through differential analysis based on contrasts inside GLM models

Sample

Tissue

Treatment

Replicate

MatureLeaf_NoSi_R1

MatureLeaf

NoSi

R1

MatureLeaf_NoSi_R2

MatureLeaf

NoSi

R2

MatureLeaf_NoSi_R3

MatureLeaf

NoSi

R3

MatureLeaf_Si_R1

MatureLeaf

Si

R1

MatureLeaf_Si_R2

MatureLeaf

Si

R2

MatureLeaf_Si_R3

MatureLeaf

Si

R3

Root_NoSi_R1

Root

NoSi

R1

Root_NoSi_R2

Root

NoSi

R2

Root_NoSi_R3

Root

NoSi

R3

Root_Si_R1

Root

Si

R1

Root_Si_R2

Root

Si

R2

Root_Si_R3

Root

Si

R3

  1. The target table provides the experimental design. Each row describes a sample by specifying the level for each factor in the columns