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Table 3 Examples of rearrangements in the Yugu1 genomeidentified by long paired ends

From: High-throughput long paired-end sequencing of a Fosmid library by PacBio

Support read number

(non-duplicate)

Support read number

(duplicate)

SV type

SV length (bp)

Coordinate (bp)

12

81

Deletion

58,435

Chr: NC_028457.1

39834375–39892810

11

32

Duplication

33,248

Chr: NC_028455.1

29621517–29654765

10

47

Duplication

49,573

Chr: NC_028452.1

16482798–16532371

10

43

Translocation

Non

NC_028452.1

28454982

NC_028451.1

596035

9

59

Translocation

Non

NC_028453.1

23754472

NC_028452.1

6538935

  1. SV: structural arrangement; Coordinate: the location of SVs; NC_: chromosome; NW: scaffold