TY - JOUR AU - Barrangou, R. AU - Fremaux, C. AU - Deveau, H. AU - Richards, M. AU - Boyaval, P. AU - Moineau, S. PY - 2007 DA - 2007// TI - CRISPR provides acquired resistance against viruses in prokaryotes JO - Science VL - 315 UR - https://doi.org/10.1126/science.1138140 DO - 10.1126/science.1138140 ID - Barrangou2007 ER - TY - JOUR AU - Bhaya, D. AU - Davison, M. AU - Barrangou, R. PY - 2011 DA - 2011// TI - CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation JO - Ann Rev Genet VL - 45 UR - https://doi.org/10.1146/annurev-genet-110410-132430 DO - 10.1146/annurev-genet-110410-132430 ID - Bhaya2011 ER - TY - JOUR AU - Cong, L. AU - Ran, F. A. AU - Cox, D. AU - Lin, S. AU - Barretto, R. AU - Habib, N. PY - 2013 DA - 2013// TI - Multiplex genome engineering using CRISPR/Cas systems JO - Science VL - 339 UR - https://doi.org/10.1126/science.1231143 DO - 10.1126/science.1231143 ID - Cong2013 ER - TY - JOUR AU - Wang, H. AU - Yang, H. AU - Shivalila, C. S. AU - Dawlaty, M. M. AU - Cheng, A. W. AU - Zhang, F. AU - Jaenisch, R. PY - 2013 DA - 2013// TI - One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering JO - Cell VL - 153 UR - https://doi.org/10.1016/j.cell.2013.04.025 DO - 10.1016/j.cell.2013.04.025 ID - Wang2013 ER - TY - JOUR AU - Pandey, P. K. AU - Quilichini, T. D. AU - Vaid, N. AU - Gao, P. AU - Ziang, D. PY - 2019 DA - 2019// TI - Versatile and multifaceted CRISPR/Cas gene editing tool for plant research JO - Semin Cell Develop Biol. UR - https://doi.org/10.1016/j.semcdb.2019.04.012 DO - 10.1016/j.semcdb.2019.04.012 ID - Pandey2019 ER - TY - JOUR AU - Jiang, W. AU - Zhou, H. AU - Bi, H. AU - Fromm, M. AU - Yang, B. AU - Weeks, D. P. PY - 2013 DA - 2013// TI - Demonstration of CRISPR/Cas9/sgRNA-mediated targeted gene modification in Arabidopsis, tobacco, sorghum and rice JO - Nucleic Acids Res UR - https://doi.org/10.1093/nar/gkt780 DO - 10.1093/nar/gkt780 ID - Jiang2013 ER - TY - JOUR AU - Feng, C. AU - Yuan, J. AU - Wang, R. AU - Liu, Y. AU - Birchler, J. A. AU - Han, F. PY - 2016 DA - 2016// TI - Efficient targeted genome modification in maize using CRISPR/Cas9 system JO - J Genet Genom VL - 43 UR - https://doi.org/10.1016/j.jgg.2015.10.002 DO - 10.1016/j.jgg.2015.10.002 ID - Feng2016 ER - TY - JOUR AU - Miao, J. AU - Guo, D. AU - Zhang, J. AU - Huang, Q. AU - Qin, G. AU - Zhang, X. PY - 2013 DA - 2013// TI - Targeted mutagenesis in rice using CRISPR-Cas system JO - Cell Res VL - 23 UR - https://doi.org/10.1038/cr.2013.123 DO - 10.1038/cr.2013.123 ID - Miao2013 ER - TY - JOUR PY - 2018 DA - 2018// TI - Shifting the limits in wheat research and breeding using a fully annotated reference genome JO - Science UR - https://doi.org/10.1126/science.aar7191 DO - 10.1126/science.aar7191 ID - ref9 ER - TY - JOUR AU - Zhang, Y. AU - Liang, Z. AU - Zong, Y. AU - Wang, Y. AU - Liu, J. AU - Chen, K. PY - 2016 DA - 2016// TI - Efficient and transgene-free genome editing in wheat through transient expression of CRISPR/Cas9 DNA or RNA JO - Nat Commun. VL - 7 UR - https://doi.org/10.1038/ncomms12617 DO - 10.1038/ncomms12617 ID - Zhang2016 ER - TY - JOUR AU - Howells, R. M. AU - Craze, M. AU - Bowden, S. AU - Wallington, E. J. PY - 2018 DA - 2018// TI - Efficient generation of stable, heritable gene edits in wheat using CRISPR/Cas9 JO - BMC Plant Biol VL - 18 UR - https://doi.org/10.1186/s12870-018-1433-z DO - 10.1186/s12870-018-1433-z ID - Howells2018 ER - TY - JOUR AU - Singh, M. AU - Kumar, M. AU - Albertsen, M. C. AU - Young, J. K. AU - Cigan, A. M. PY - 2018 DA - 2018// TI - Concurrent modification in the three homeologs of Ms45 gene with CRISPR/Cas9 lead to rapid generation of male sterile bread what (Triticum aestivum L.) JO - Plant Molec Biol. VL - 97 UR - https://doi.org/10.1007/s11103-018-0749-2 DO - 10.1007/s11103-018-0749-2 ID - Singh2018 ER - TY - JOUR AU - Zhang, Y. AU - Bai, Y. AU - Wu, G. AU - Zou, S. AU - Chen, Y. AU - Gao, C. AU - Tang, D. PY - 2017 DA - 2017// TI - Simultaneous modification of three homoeologs of TaEDR1 by genome editing enhances powdery mildew resistance in wheat JO - Plant J. VL - 91 UR - https://doi.org/10.1111/tpj.13599 DO - 10.1111/tpj.13599 ID - Zhang2017 ER - TY - JOUR AU - Pauwels, L. AU - Clercq, R. AU - Goossens, J. AU - Iñigo, S. AU - Williams, C. AU - Ron, M. AU - Britt, A. AU - Goossens, A. PY - 2018 DA - 2018// TI - A dual sgRNA approach for functional genomics in Arabidopsis thaliana JO - G3 Genes Genomes Genet VL - 8 ID - Pauwels2018 ER - TY - JOUR AU - Wang, Z. AU - Wang, S. AU - Li, D. AU - Zhang, Q. AU - Li, L. AU - Zhong, C. AU - Liu, Y. AU - Huang, H. PY - 2018 DA - 2018// TI - Optimized paired-sgRNA/Cas9 cloning and expression cassette triggers high-eficiency multiplex genome editing in kiwifruit JO - Plant Biotechnol J VL - 16 UR - https://doi.org/10.1111/pbi.12884 DO - 10.1111/pbi.12884 ID - Wang2018 ER - TY - JOUR AU - Zhou, H. AU - Liu, B. AU - Weeks, D. P. AU - Spalding, M. H. AU - Yang, B. PY - 2014 DA - 2014// TI - Large chromosomal deletions and heritable small genetic changes induced by CRISPR/Cas9 in rice JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gku806 DO - 10.1093/nar/gku806 ID - Zhou2014 ER - TY - STD TI - Balcerzak M, Leung W, Ouellet T. Two disease susceptibility genes for FHB in wheat. In: Miller S, editor. Proceedings of the 8th Canadian workshop on fusarium head blight. Ottawa, Canada; 2016. p. 39. ID - ref17 ER - TY - STD TI - Ouellet T, Balcerzak M, Rocheleau H, Wang L, Wojcik P, Dzwinel W. Comparison of fusarium head blight-resistant and -susceptible wheat using global expression profiling. In: Proceedings of the 7th International Triticeae Symposium. Chengdu, China; 2013. p. 37. ID - ref18 ER - TY - JOUR AU - Li, J. F. AU - Zhang, D. AU - Sheen, J. PY - 2015 DA - 2015// TI - Targeted plant genome editing via the CRISPR/Cas9 technology JO - Methods Mol Biol VL - 1284 UR - https://doi.org/10.1007/978-1-4939-2444-8_12 DO - 10.1007/978-1-4939-2444-8_12 ID - Li2015 ER - TY - JOUR AU - Schuelke, M. PY - 2000 DA - 2000// TI - An economic method for the fluorescent labeling of PCR fragments JO - Nat Biotechnol. VL - 18 UR - https://doi.org/10.1038/72708 DO - 10.1038/72708 ID - Schuelke2000 ER - TY - STD TI - IWGSC BLAST site at URGI. https://urgi.versailles.inra.fr/blast_iwgsc/. Accessed throughout Jan 2015. UR - https://urgi.versailles.inra.fr/blast_iwgsc/ ID - ref21 ER - TY - JOUR AU - Hattori, J. AU - Ouellet, T. AU - Tinker, N. A. PY - 2005 DA - 2005// TI - Wheat EST sequence assembly facilitates comparison of gene contents among plant species and discovery of novel genes JO - Genome. VL - 48 UR - https://doi.org/10.1139/g04-106 DO - 10.1139/g04-106 ID - Hattori2005 ER - TY - JOUR AU - Liu, Y. AU - Tao, W. AU - Wen, S. AU - Li, Z. AU - Yang, A. AU - Deng, Z. AU - Sun, Y. PY - 2015 DA - 2015// TI - In vitro CRISPR/Cas9 system for efficient targeted DNA editing JO - mBio UR - https://doi.org/10.1128/mbio.01714-15 DO - 10.1128/mbio.01714-15 ID - Liu2015 ER - TY - JOUR AU - Shan, Q. AU - Wang, Y. AU - Li, J. AU - Gao, C. PY - 2014 DA - 2014// TI - Genome editing in rice and wheat using the CRISPR/Cas system JO - Nat Protoc VL - 9 UR - https://doi.org/10.1038/nprot.2014.157 DO - 10.1038/nprot.2014.157 ID - Shan2014 ER - TY - JOUR AU - Wang, W. AU - Akhunova, A. AU - Chao, S. AU - Akhunov, E. PY - 2016 DA - 2016// TI - Optimizing multiplex CRISPR/Cas9-based genome editing for wheat JO - BioRxiv. UR - https://doi.org/10.1101/051342 DO - 10.1101/051342 ID - Wang2016 ER - TY - JOUR AU - Lin, C. -. S. AU - Hsu, C. -. T. AU - Yang, L. -. H. AU - Lee, L. -. Y. AU - Fu, J. -. Y. AU - Cheng, Q. -. W. PY - 2018 DA - 2018// TI - Application of protoplast technology to CRISPR/Cas9 mutagenesis: from single-cell mutation detection to mutant plant regeneration JO - Plant Biotechnol J VL - 16 UR - https://doi.org/10.1111/pbi.12870 DO - 10.1111/pbi.12870 ID - Lin2018 ER - TY - JOUR AU - Laxa, M. PY - 2017 DA - 2017// TI - Intron-mediated enhancement: a tool for heterologous gene expression in plants? JO - Front Plant Sci VL - 7 UR - https://doi.org/10.3389/fpls.2016.01977 DO - 10.3389/fpls.2016.01977 ID - Laxa2017 ER - TY - JOUR AU - Anderson, E. M. AU - Haupt, A. AU - Schiel, J. A. AU - Chou, E. AU - Machado, H. B. AU - Strezoska, Ž. PY - 2015 DA - 2015// TI - Systematic analysis of CRISPR–Cas9 mismatch tolerance reveals low levels of off-target activity JO - J Biotechnol VL - 211 UR - https://doi.org/10.1016/j.jbiotec.2015.06.427 DO - 10.1016/j.jbiotec.2015.06.427 ID - Anderson2015 ER - TY - JOUR AU - Guo, J. AU - Li, K. AU - Jin, L. AU - Xu, R. AU - Miao, K. AU - Yang, F. PY - 2018 DA - 2018// TI - A simple and cost-effective method for screening of CRISPR/Cas9-induced homozygous/biallelic mutants JO - Plant Methods. VL - 14 UR - https://doi.org/10.1186/s13007-018-0305-8 DO - 10.1186/s13007-018-0305-8 ID - Guo2018 ER - TY - STD TI - Broad Institute Genetic Perturbation Platform Web Portal. http://www.broadinstitute.org/rnai/public/analysis-tools/sgrna-design. Accessed throughout Jan 2015 and July 2016. UR - http://www.broadinstitute.org/rnai/public/analysis-tools/sgrna-design ID - ref30 ER - TY - STD TI - Index of /download/iwgsc/IWGSC_RefSeq_Assemblies/v1.0. https://urgi.versailles.inra.fr/download/iwgsc/IWGSC_RefSeq_Assemblies/v1.0/. Accessed Feb to Mar 2017. UR - https://urgi.versailles.inra.fr/download/iwgsc/IWGSC_RefSeq_Assemblies/v1.0/ ID - ref31 ER - TY - JOUR AU - Shan, Q. AU - Wang, Y. AU - Li, J. AU - Zhang, Y. AU - Chen, K. AU - Liang, Z. PY - 2013 DA - 2013// TI - Targeted genome modification of crop plants using a CRISPR-Cas system JO - Nat Biotechnol VL - 31 UR - https://doi.org/10.1038/nbt.2650 DO - 10.1038/nbt.2650 ID - Shan2013 ER - TY - STD TI - Integrated DNA Technologies gBlocks Gene Fragments. https://www.idtdna.com/pages/products/genes/gblocks-gene-fragments. Accessed throughout Jan 2015 and July 2016. UR - https://www.idtdna.com/pages/products/genes/gblocks-gene-fragments ID - ref33 ER - TY - JOUR AU - Gibson, D. G. AU - Young, L. AU - Chuang, R. Y. AU - Venter, J. C. AU - Hutchison, C. A. AU - Smith, H. O. PY - 2009 DA - 2009// TI - Enzymatic assembly of DNA molecules up to several hundred kilobases JO - Nat Methods VL - 6 UR - https://doi.org/10.1038/nmeth.1318 DO - 10.1038/nmeth.1318 ID - Gibson2009 ER - TY - STD TI - Addgene, the non-profit plasmid repository—pFGC-pcoCas9. https://www.addgene.org/52256/. Accessed 19 Sept 2016. UR - https://www.addgene.org/52256/ ID - ref35 ER - TY - JOUR AU - Curtis, M. D. AU - Grossniklaus, U. A. PY - 2003 DA - 2003// TI - Gateway cloning vector set for high-throughput functional analysis of genes in planta JO - Plant Physiol VL - 133 UR - https://doi.org/10.1104/pp.103.027979 DO - 10.1104/pp.103.027979 ID - Curtis2003 ER - TY - JOUR AU - Matz, M. V. AU - Fradkov, A. F. AU - Labas, Y. A. AU - Savitsky, A. P. AU - Zaraisky, A. G. AU - Markelov, M. L. AU - Lukyanov, S. A. PY - 1999 DA - 1999// TI - Fluorescent proteins from nonbioluminescent Anthozoa species JO - Nat Biotechnol VL - 17 UR - https://doi.org/10.1038/13657 DO - 10.1038/13657 ID - Matz1999 ER - TY - STD TI - CRISPR RGEN Tools/Cas-Analyser. http://www.rgenome.net/cas-analyzer/#!. Accessed Sept to Dec 2017. UR - http://www.rgenome.net/cas-analyzer/#! ID - ref38 ER - TY - JOUR AU - Park, J. AU - Lim, K. AU - Kim, J. S. AU - Bae, S. PY - 2017 DA - 2017// TI - Cas-analyzer: an online tool for assessing genome editing results using NGS data JO - Bioinformatics VL - 33 UR - https://doi.org/10.1093/bioinformatics/btw561 DO - 10.1093/bioinformatics/btw561 ID - Park2017 ER - TY - JOUR AU - Jordon, M. C. PY - 2000 DA - 2000// TI - Green fluorescent protein as a visual marker for wheat transformation JO - Plant Cell Rep VL - 19911 UR - https://doi.org/10.1007/s002990000246 DO - 10.1007/s002990000246 ID - Jordon2000 ER -