Skip to main content

Table 2 Sen3 markers validation in a panel of 56 varieties

From: Comparative Subsequence Sets Analysis (CoSSA) is a robust approach to identify haplotype specific SNPs; mapping and pedigree analysis of a potato wart disease resistance gene Sen3

Variety

Registration

Flanking makers

Resistant to

Clone in pedigree

Country

Year

FM1

FM2

P1

P2

P6

P18

Ora

BRA-9089

Capella

Actaro

HOL

2013

0

0

R

R

R

R

   

Adam

POL

2005

1

1

R

R

R

R

?

?

?

Alegria

BRD

2003

0

0

S

S

S

S

   

AM78-3704

HOL

 

0

0

R

R

R

R

   

Andante

BRD

2003

0

0

R

R

R

R

   

Antares

DDR

1961

0

0

R

R

 

R

   

Apollo

DDR

1956

0

0

R

R

 

R

   

Aventra

HOL

2005

0

0

S

R

R

R

   

Axion

HOL

2008

0

0

R

R

R

R

   

Belita

HOL

1986

0

0

R

R

R

R

   

Bintje

HOL

1910

0

0

S

S

S

S

   

BRA9089

GER

 

0

0

S

S

S

S

   

Bzura

POL

1983

1

1

R

R

R

R

y

y

y

Capella

GER

1943

0

0

       

Carrera

HOL

1999

0

0

R

S

R

S

   

Cekin

POL

2004

1

1

R

R

R

R

?

?

?

Celandine

HOL

2013

0

0

S

S

R

    

Constantina

BRD

 

1

1

R

R

R

R

?

?

?

Delcora

HOL

1988

0

0

R

R

R

S

   

Deodara

GER

1913

0

0

S

S

S

S

   

Desiree

HOL

1962

0

0

R

S

S

S

   

Eurotonda

BRD

 

1

1

R

R

R

R

?

?

?

Euroviva

BRD

 

0

0

R

R

R

R

   

Gandawa

POL

2004

1

1

R

R

R

R

?

?

?

Gawin

POL

2010

1

1

R

  

R

?

?

?

Giewont

POL

1955

0

0

R

S

S

    

Ibis

POL

1987

1

1

R

R

R

R

n

y

y

Ikar

POL

1996

2

2

R

R

R

R

n

y

y

Karlena

DDR

1988

0

0

R

S

S

S

   

Karolin

BRD

1990

1

1

R

R

R

R

y

y

y

Kuba

POL

1999

1

1

R

R

R

R

y

y

y

Kuras

HOL

1996

0

0

R

S

S

S

   

Lorch

SU

1931

0

0

S

      

Ludmilla

BRD

2008

0

0

R

S

S

S

   

Miriam

BRD

1988

0

0

R

S

S

S

   

MPI44-1016-10

GER

 

1

0

R

S

S

S

n

n

n

MPI44-1016-24

GER

 

0

0

R

R

R

R

   

Monalisa

HOL

1982

0

0

R

      

Ora

DDR

1952

1

1

R

R

R

R

–

y

y

Otolia

BRD

 

0

0

R

S

R

R

   

Parella

HOL

 

0

0

R

R

R

S

   

Polessky Rosovy

SU

1978

0

0

       

Producent

HOL

1984

0

0

R

S

S

S

   

Rudawa

BRD

2007

1

2

R

S

R

S

n

y

y

Saphir

BRD

1960

0

0

R

R

R

R

   

Smart

HOL

2008

0

0

R

S

S

R

   

Sonda

POL

 

1

1

R

R

S

S

?

?

?

Spectra

HOL

2016

0

0

R

 

R

    

Talent

BRD

2006

0

0

R

R

R

S

   

Tivoli

DEN

2002

0

0

R

R

R

R

   

Tomensa

BRD

1989

0

0

S

S

S

S

   

Transit

BRD

2009

1

2

R

R

R

R

y

y

y

Ulme

BRD

1991

1

1

R

R

R

R

y

y

y

Ultra

HOL

1999

0

0

S

 

R

    

VR808

HOL

2009

0

0

R

S

S

S

   

Zagloba

GER

 

1

1

R

R

R

R

y

y

y

  1. Flanking markers of Sen3: FM1 = chr11_1259552 and FM2 = chr11_1772869. The dosage of the FM1 and FM2 is given (0: absent, 1: simplex, 2: duplex). Pedigree information is only shown if the variety was positive for the Sen3 markers
  2. ?: No pedigree information is available, n: This clone is not in the pedigree, y: This clone is in the pedigree