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Table 2 Sen3 markers validation in a panel of 56 varieties

From: Comparative Subsequence Sets Analysis (CoSSA) is a robust approach to identify haplotype specific SNPs; mapping and pedigree analysis of a potato wart disease resistance gene Sen3

Variety Registration Flanking makers Resistant to Clone in pedigree
Country Year FM1 FM2 P1 P2 P6 P18 Ora BRA-9089 Capella
Actaro HOL 2013 0 0 R R R R    
Adam POL 2005 1 1 R R R R ? ? ?
Alegria BRD 2003 0 0 S S S S    
AM78-3704 HOL   0 0 R R R R    
Andante BRD 2003 0 0 R R R R    
Antares DDR 1961 0 0 R R   R    
Apollo DDR 1956 0 0 R R   R    
Aventra HOL 2005 0 0 S R R R    
Axion HOL 2008 0 0 R R R R    
Belita HOL 1986 0 0 R R R R    
Bintje HOL 1910 0 0 S S S S    
BRA9089 GER   0 0 S S S S    
Bzura POL 1983 1 1 R R R R y y y
Capella GER 1943 0 0        
Carrera HOL 1999 0 0 R S R S    
Cekin POL 2004 1 1 R R R R ? ? ?
Celandine HOL 2013 0 0 S S R     
Constantina BRD   1 1 R R R R ? ? ?
Delcora HOL 1988 0 0 R R R S    
Deodara GER 1913 0 0 S S S S    
Desiree HOL 1962 0 0 R S S S    
Eurotonda BRD   1 1 R R R R ? ? ?
Euroviva BRD   0 0 R R R R    
Gandawa POL 2004 1 1 R R R R ? ? ?
Gawin POL 2010 1 1 R    R ? ? ?
Giewont POL 1955 0 0 R S S     
Ibis POL 1987 1 1 R R R R n y y
Ikar POL 1996 2 2 R R R R n y y
Karlena DDR 1988 0 0 R S S S    
Karolin BRD 1990 1 1 R R R R y y y
Kuba POL 1999 1 1 R R R R y y y
Kuras HOL 1996 0 0 R S S S    
Lorch SU 1931 0 0 S       
Ludmilla BRD 2008 0 0 R S S S    
Miriam BRD 1988 0 0 R S S S    
MPI44-1016-10 GER   1 0 R S S S n n n
MPI44-1016-24 GER   0 0 R R R R    
Monalisa HOL 1982 0 0 R       
Ora DDR 1952 1 1 R R R R y y
Otolia BRD   0 0 R S R R    
Parella HOL   0 0 R R R S    
Polessky Rosovy SU 1978 0 0        
Producent HOL 1984 0 0 R S S S    
Rudawa BRD 2007 1 2 R S R S n y y
Saphir BRD 1960 0 0 R R R R    
Smart HOL 2008 0 0 R S S R    
Sonda POL   1 1 R R S S ? ? ?
Spectra HOL 2016 0 0 R   R     
Talent BRD 2006 0 0 R R R S    
Tivoli DEN 2002 0 0 R R R R    
Tomensa BRD 1989 0 0 S S S S    
Transit BRD 2009 1 2 R R R R y y y
Ulme BRD 1991 1 1 R R R R y y y
Ultra HOL 1999 0 0 S   R     
VR808 HOL 2009 0 0 R S S S    
Zagloba GER   1 1 R R R R y y y
  1. Flanking markers of Sen3: FM1 = chr11_1259552 and FM2 = chr11_1772869. The dosage of the FM1 and FM2 is given (0: absent, 1: simplex, 2: duplex). Pedigree information is only shown if the variety was positive for the Sen3 markers
  2. ?: No pedigree information is available, n: This clone is not in the pedigree, y: This clone is in the pedigree