Skip to main content

Table 1 Summary of basic parameters in three RNA sequencing datasets

From: Comparative performance of the BGISEQ-500 and Illumina HiSeq4000 sequencing platforms for transcriptome analysis in plants

 

Sample

Total raw reads (Mb)

Total clean reads (Mb)

Genome mapped reads (Mb)

Gene mapped reads (Mb)

Genome mapping rate (%)

Gene mapping rate (%)

HI-SEQ4000

PE100

1_DMSO_6 h_1

70.14

65.81

63.59

60.22

96.62

91.50

2_DMSO_6h_2

70.14

67.00

64.78

61.59

96.68

91.92

3_DMSO_6h_3

70.14

65.54

63.09

59.47

96.26

90.74

4_ABA_6h_1

70.14

66.44

63.52

59.48

95.60

89.53

5_ABA_6h_2

70.14

67.02

64.72

61.60

96.57

91.92

6_ABA_6h_3

70.14

66.86

64.46

60.82

96.41

90.97

BGI-SEQ500

PE100

1_DMSO_6h_1

72.10

67.00

65.44

61.19

97.67

91.33

2_DMSO_6h_2

69.63

65.85

64.53

63.06

97.99

95.77

3_DMSO_6hJ_

69.62

65.80

64.14

62.02

97.47

94.25

4_ABA_6h_1

69.57

65.99

64.69

62.97

98.03

95.42

5_ABA_6h_2

69.57

65.78

64.63

63.13

98.25

95.97

6_ABA_6h_3

69.64

65.47

64.16

62.75

98.00

95.85

BGI-SEQ500

PE75

1_DMSO_6h_1

69.50

67.80

65.76

63.39

96.99

93.50

2_DMSO_6h_2

69.69

67.79

65.49

63.25

96.60

93.31

3_DMSO_6h_3

68.16

66.41

64.41

61.99

96.99

93.34

4_ABA_6h_1

67.36

65.67

63.71

61.49

97.02

93.64

5_ABA_6h_2

67.92

66.26

64.25

62.05

96.96

93.64

6_ABA_6h_3

69.71

68.02

66.68

64.06

98.03

94.18