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Fig. 1 | Plant Methods

Fig. 1

From: MeioSeed: a CellProfiler-based program to count fluorescent seeds for crossover frequency analysis in Arabidopsis thaliana

Fig. 1

Overview of the Col3-4/20 (♂) × Ler-0 (♀) crossing scheme and possible outcomes of meiotic recombination events and subsequent chromosome segregation. Meiotic reporter line Col3-4/20 (♂) harboring RFP and GFP reporter constructs at the top of the long arm of chromosome 3 (separated by a genetic distance of 16 cM) is crossed with the accession Ler-0 (♀). The resulting F1 hybrids are selfed and their F2 seeds are collected. Overall crossover frequencies are calculated from RFP and GFP fluorescence images using the formula for crossover frequency described previously [16]. Crossover events referred to as ‘visible crossover events’ can be observed directly as the F2 seeds displaying either only RFP or only GFP signal. Crossover events referred to as ‘extrapolated crossover events’ are not directly visible based on the fluorescence images only. The frequency of these events is extrapolated from the fluorescence images based on theoretical allele frequencies as described previously [16]. For the sake of clarity of the figure the chromosomes are presented in the colors of the original parent throughout the crossing scheme (black for Col3-4/20 and blue for Ler-0)

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