Skip to main content

Advertisement

Table 3 Transcription factors differentially expressed in the epidermis in the developing embryo.

From: Combining laser-assisted microdissection (LAM) and RNA-seq allows to perform a comprehensive transcriptomic analysis of epidermal cells of Arabidopsis embryo

AGI Name LogDiff Epidermis/mesophyll Expressed in the embryo Localisation References
At5g17800 AtMYB56 myb domain protein 56 > 10 Yes   
AT3G15510 ATNAC2 NAC domain containing protein 2 9.70 Yes   
AT5G45980 WOX8 WUSCHEL-related homeobox 8 9.09 Yes   
AT4g31680   Transcriptional factor B3 family protein 6.5 Yes   
AT2G20825 ULT2 ULTRAPETALA 2 5.23    
AT1G49770   bHLH 5.08    
AT3G27785 MYB118 myb domain protein 118 5.03 Yes   
AT2G38470 #N/A   4.97   Epidermis Suh et al. [39]
AT1G27730 STZ SALT TOLERANCE ZINC FINGER 4.71    
AT4G25490 CBF1 C-REPEAT/DRE BINDING FACTOR 1 4.58 Yes   
AT5G62470 MYB96 myb domain protein 96 4.43 Yes   
AT3G61250 AtMYB17 myb domain protein 17 4.23 Yes   
AT5G47230 ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5 4.15    
AT5G59820 RHL41 RESPONSIVE TO HIGH LIGHT 41 3.95    
AT1G65620 AS2 ASYMMETRIC LEAVES 2 3.83 Yes   
AT5G18270 ANAC087   3.81 Yes   
AT3G47600 MYB94 myb domain protein 94 3.71 Yes   
AT5G46880 HB-7 homeobox-7 3.65 Yes Epidermis Nakamura et al. [25]
AT2G27050 EIL1 ETHYLENE-INSENSITIVE3-LIKE 1 3.54 Yes   
AT5G49330 AtMYB111 myb domain protein 111 3.23    
AT2G36890 ATMYB38 myb domain protein 38 3.11 Yes   
AT4G38620 MYB4 myb domain protein 4 3.06 Yes   
AT4G04890 PDF2 PROTODERMAL FACTOR2 3.03 Yes Epidermis Abe et al. [1]
AT4G21750 ATML1 MERISTEM LAYER 1 2.86 Yes Epidermis Sessions et al. [34]
AT5G14750 WER WEREWOLF 1 2.78 Yes Epidermis Ryu et al. [31]
AT1G32640 ATMYC2 JASMONATE INSENSITIVE 1 2.67    
AT3G62610 AtMYB11 myb domain protein 11 2.64 Yes   Stracke et al. 2007
AT1G63650 EGL3 ENHANCER OF GLABRA3 2.51 Yes Epidermis Bernhardt et al. [6]
AT3G52910 AtGRF4 GROWTH-REGULATING FACTOR 4 2.37 Yes   
AT4G01250 WRKY22 WRKY DNA-binding protein 22 2.34 Yes   
AT1G21970 LEC1 LEAFY COTYLEDON 1 2.31 Yes Epidermis Lotan et al. [22]
AT4G16780 ATHB-2 Homeobox-leucine zipper protein HAT4 2.29    
AT4G25470 CBF2 FREEZING TOLERANCE QTL 4 2.18    
AT1G14687 ATHB32   2.14 Yes   
AT3G16770 ATEBP/RAP2.3   2.09 Yes   
AT2G45190 AFO ABNORMAL FLORAL ORGANS 1.99 Yes   
AT4G24240 WRKY7   1.88 Yes   
AT4G31550 WRKY11   1.51 Yes   
AT1G14440 ATHB31   1.46 Yes   
AT3G01460 #N/A   1.40 Yes   
AT4G36930 SPT SPATULA 1.18 Yes   
AT2G34710 PHB PHABULOSA 1.17 Yes   
AT3G26790 FUS3 FUSCA 3 1.08 Yes Epidermis Tsuchiya et al. [42]
AT3G62670 ARR20 ARABIDOPSIS RESPONSE REGULATOR 0.86 Yes