Table 10 TPSs genes clustering across various genomes using IGMAP
From: Terzyme: a tool for identification and analysis of the plant terpenome
Plant | Total TPSs | TPS present within clusters | Clustered genes (%) |
|---|---|---|---|
Monocots | |||
Poaceae | |||
Oryza sativa | 71 | 48 | 67.6056338 |
Sorghum bicolor | 46 | 34 | 73.91304348 |
Zea mays | 47 | 17 | 36.17021277 |
Brachypodium distachyon | 23 | 13 | 56.52173913 |
Eudicots | |||
Brassicaceae | |||
Arabidopsis thaliana | 42 | 27 | 64.28571429 |
Brassica rapa | 47 | 25 | 53.19148936 |
Malvaceae | |||
Gossypium raimondii | 76 | 62 | 81.57894737 |
Rosaceae | |||
Fragaria vesca | 60 | 46 | 76.66666667 |
Solanaceae | |||
Solanum lycopersicum | 63 | 46 | 73.01587302 |
Solanum tuberosum | 89 | 76 | 85.39325843 |
Fabaceae | |||
Glycine max | 45 | 24 | 53.33333333 |
Cicer arietinum (desi) | 25 | 2 | 8.00 |
Medicago truncatula | 52 | 31 | 59.61538462 |
Phaseolus vulgaris | 49 | 41 | 83.67346939 |
Salicaceae | |||
Populus trichocarpa | 65 | 35 | 53.84615385 |
Vitaceae | |||
Vitis vinifera | 118 | 83 | 70.33898305 |
Clustering significance (unranked T-test) | P < 5.52302E − 08 | ||