Table 3 3C primers for NlaIII restriction profile
From: A cautionary note on the use of chromosome conformation capture in plants
Name | Gene locus and restriction enzyme | Primer on | Seq 5′ to 3′ |
|---|---|---|---|
PDS7922 | SOC1_NlaIII | Fragment A | ACCGTTGGATGAAAGAGCAT |
PDS7923 | SOC1_NlaIII | Fragment B | CGCGTCTACAGAAAGTTAACCA |
PDS7924 | SOC1_NlaIII | Fragment C | TGACCTTACCCACATAGAAACAC |
PDS7925 | SOC1_NlaIII | Fragment D | GCCAAACCAACATCACAAAA |
PDS7926 | SOC1_NlaIII | Fragment E | GAAAACAAAAGGAGCGAAAAA |
PDS7927 | SOC1_NlaIII | Fragment F | TTTTTCCCACCCTTATTTCTC |
PDS7928 | SOC1_NlaIII | Fragment G | CATTGCCCCATTGTCTCTGT |
PDS7920 | SOC1_NlaIII | Fragment H | ATCCTCGAAAGCTTCCTCCT |
PDS7929 | SOC1_NlaIII | Fragment I | AATCATCTGTCTCTCTCTTTCTCAA |
PDS7930 | SOC1_NlaIII | Fragment J | TGAAAATGCCAGCTTTTGAT |
PDS7931 | SOC1_NlaIII | Fragment K | GAGCGGTAATGAATATAACCACAA |
PDS7932 | SOC1_NlaIII | Fragment L | TTGGTTATCTTCAATCATCAACCT |
PDS7933 | SOC1_NlaIII | Fragment M | TGATTCTGAACTGCTTGTGTTATG |
PDS7934 | SOC1_NlaIII | Fragment N | ATCCATTGGCCAAAAATCAA |
PDS7935 | SOC1_NlaIII | Fragment O | GAGGCTTTTAGCCCATCAAA |
PDS7936 | SOC1_NlaIII | Fragment P | CGACGTCGCACGATTTATTA |
PDS7939 | TIP41_Like NlaIII | Bait-TSS | CCGGCCTAGTTTCATTTTAGTT |
PDS7940 | TIP41_Like NlaIII | − 1000 | CGAGCACAAATACAAAACCG |