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Table 3 Summary of alignment statistics of sequencing data

From: Development of a universal and simplified ddRAD library preparation approach for SNP discovery and genotyping in angiosperm plants

Individual no. Scaffolds (%) CDS (%) Repeats (%)
Read1 Read2 Read1 Read2 Read1 Read2
Protocol A
D. latiflorus-3 63.21 61.35
C. pallens 15.83 13.95 3.31 3.10 0.49 0.39
Protocol B
Oryza sativa 88.22 82.50 19.39 19.64 6.85 7.70
Zea mays 90.66 84.86 2.38 2.83 10.95 8.82
P. edulis 83.80 79.93 2.38 2.87 0.11 0.17
A. semialata 3.37 3.71 1.08 1.11 0.00 0.22
D. latiflorus-1 62.23 61.97
D. latiflorus-2 64.15 62.59
P. rubicunda 23.19 21.72 1.40 1.59 0.10 0.15
P. vivax 25.56 24.66 1.39 1.64 0.11 0.16
  1. As CDS and repeats region were not available for D. latiflorus survey genome sequences, MiddRAD data of D. latiflorus individuals were only mapped to the assembled scaffolds