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Table 2 Number of fragments between 400–700 bp produced by in silico digestion of 23 species

From: Development of a universal and simplified ddRAD library preparation approach for SNP discovery and genotyping in angiosperm plants

Species SbfI + EcoRI SbfI + MlucI NlaIII + MlucI AvaII + MspI EcoRI + MspI PstI + MspI
Brassica rapa 132 287 42,400 42,261 14,803 11,512
Glycine max 521 524 51,073 105,780 42,596 18,519
Populus trichocarpa 441 226 20,508 45,611 23,272 13,128
Vitis vinifera 386 383 32,588 50,912 21,822 11,769
Brachypodium distachyon 796 1948 50,586 60,014 18,552 21,701
Carica papaya 276 235 19,405 32,969 14,169 8258
Physcomitrella patens 433 481 30,274 45,223 20,689 14,832
Cucumis sativus 103 83 10,113 13,958 8173 3791
Musa acuminata 389 913 51,225 55,068 26,123 17,209
Nelumbo nucifera 783 607 80,253 140,632 49,260 24,250
Theobroma cacao 242 209 16,355 31,259 17,838 12,145
Phoenix dactylifera 622 876 64,497 95,233 36,744 26,304
Amborella trichopoda 1285 972 61,985 121,796 35,348 16,701
Beta vulgaris 541 472 42,743 65,689 29,666 13,827
Sesamum indicum 277 152 15,658 37,530 17,857 11,229
Eucalyptus grandis 655 666 65,729 129,175 53,775 26,496
Prunus persica 274 123 14,466 34,514 14,194 9910
Solanum lycopersicum 2250 421 42,919 93,748 36,617 16,313
Oryza sativa 696 1451 61,098 75,621 23,537 24,080
Phyllostachys edulis 2309 7086 367,267 458,669 130,850 116,861
Sorghum bicolor 1923 2740 128,588 161,131 56,433 56,091
Setaria italica 896 2434 81,751 96,716 26,592 31,528
Zea mays 3344 289 521,797 517,204 122,210 131,141