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Table 2 Number of fragments between 400–700 bp produced by in silico digestion of 23 species

From: Development of a universal and simplified ddRAD library preparation approach for SNP discovery and genotyping in angiosperm plants

Species

SbfI + EcoRI

SbfI + MlucI

NlaIII + MlucI

AvaII + MspI

EcoRI + MspI

PstI + MspI

Brassica rapa

132

287

42,400

42,261

14,803

11,512

Glycine max

521

524

51,073

105,780

42,596

18,519

Populus trichocarpa

441

226

20,508

45,611

23,272

13,128

Vitis vinifera

386

383

32,588

50,912

21,822

11,769

Brachypodium distachyon

796

1948

50,586

60,014

18,552

21,701

Carica papaya

276

235

19,405

32,969

14,169

8258

Physcomitrella patens

433

481

30,274

45,223

20,689

14,832

Cucumis sativus

103

83

10,113

13,958

8173

3791

Musa acuminata

389

913

51,225

55,068

26,123

17,209

Nelumbo nucifera

783

607

80,253

140,632

49,260

24,250

Theobroma cacao

242

209

16,355

31,259

17,838

12,145

Phoenix dactylifera

622

876

64,497

95,233

36,744

26,304

Amborella trichopoda

1285

972

61,985

121,796

35,348

16,701

Beta vulgaris

541

472

42,743

65,689

29,666

13,827

Sesamum indicum

277

152

15,658

37,530

17,857

11,229

Eucalyptus grandis

655

666

65,729

129,175

53,775

26,496

Prunus persica

274

123

14,466

34,514

14,194

9910

Solanum lycopersicum

2250

421

42,919

93,748

36,617

16,313

Oryza sativa

696

1451

61,098

75,621

23,537

24,080

Phyllostachys edulis

2309

7086

367,267

458,669

130,850

116,861

Sorghum bicolor

1923

2740

128,588

161,131

56,433

56,091

Setaria italica

896

2434

81,751

96,716

26,592

31,528

Zea mays

3344

289

521,797

517,204

122,210

131,141